[aspect-devel] ASPECT on Mac

[Sylvia Rockel]

Hi Timo,

> Do you get something else when running in debug mode?
I don't think so. Looks very similar, although the exception is again
displayed very cryptically.


> Also, it looks like you are running ASPECT 1.1. Can you install the
> newest development version from git?
I tried, but it gave an compile error, since the link.h couldn't be found.
File is attached.

Best,
Sylvia

> On Wed, Oct 1, 2014 at 3:06 PM, Sylvia Rockel
> <sylvia.rockel at fu-berlin.de> wrote:
>> Dear Timo,
>>
>> thanks a lot for the hint.
>>
>>> Do you have the rights to create files in the directory you are running
>>> programs at?
>>
>> Perfect, deal.ii problem seems to be solved now. You were right, as I
>> was
>> logged in as admin, I thought I've got all rights, but I was wrong.
>> Changed
>> permissions and now it's running smoothly.
>>
>> But I still have this ASPECT problem while running mpi. In direct run,
>> everything works just fine. Could you please have a look on the file
>> attached?
>>
>> Best,
>> Sylvia
>>
>>
>>> On Wed, Oct 1, 2014 at 7:57 AM, Sylvia Rockel
>>> <sylvia.rockel at fu-berlin.de> wrote:
>>>> Dear Timo,
>>>>
>>>> I've re-installed my os x now and installed aspect again, but it's
>>>> still
>>>> the same.
>>>>
>>>> Concerning deal.ii step-32:
>>>> It still doesn't work with mpi. I also tested to run it directly, but
>>>> it's
>>>> the same error, see attached file. I really have to set the graphical
>>>> output to false and then it works fine.
>>>>
>>>> Concerning aspect:
>>>> I'm currently testing all cookbooks for whether they work with mpi or
>>>> not.
>>>> As far as I've come right now, only stokes works with mpi. The others,
>>>> i. e.:
>>>>
>>>> - composition-active,
>>>> - convection-box
>>>> - convection-box-3d
>>>> - free-surface
>>>>
>>>> all get sooner or later the same exception, but I like to run them
>>>> directly later, to determine, whether this is also the case without
>>>> mpi,
>>>> since it's something concerning the residual.
>>>>
>>>> So, I'll give you an update as soon as I tested everything.
>>>>
>>>> Best,
>>>> Sylvia
>>>>
>>>>> Dear Timo,
>>>>>
>>>>> that's what I thought. You are perfectly right, if I run aspect
>>>>> directly
>>>>> everything works just fine. Honestly I haven't tried it with deal,
>>>>> 'cause
>>>>> it
>>>>> run through if I canceled the graphical output. You may find the
>>>>> output
>>>>> of
>>>>> "which mpirun" etc. attached. As you can see, it's the one from deal.
>>>>> Same
>>>>> is true for mpicc, mpic++, and mpif77/mpif90.
>>>>>
>>>>> The only additional mpiexe are in the petsc bin, but this is turned
>>>>> of
>>>>> for
>>>>> aspect anyways. I'm slightly out of ideas right now.
>>>>>
>>>>> Thanks for your quick reply.
>>>>>
>>>>> Best,
>>>>> Sylvia
>>>>>
>>>>>
>>>>>
>>>>>> Dear Sylvia,
>>>>>>
>>>>>> all these errors (and weird output) is related to your mpirun
>>>>>> problem.
>>>>>> It looks like the mpirun isn't from the same MPI library that is
>>>>>> used
>>>>>> to compile the code. I assume things work correctly if you run
>>>>>> aspect
>>>>>> or step-32 directly (so "./aspect cookbooks/convection.box.prm")?
>>>>>>
>>>>>> Can you check if there is an mpirun (or mpiexec) in one of the
>>>>>> directories installed by the deal.II bundle?
>>>>>>
>>>>>> Can you please post the output of "which mpirun" and "ldd
>>>>>> libdeal_II.so" (the last one needs to be run in the lib/ directory
>>>>>> of
>>>>>> the installation folder of deal.II)?
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Timo Heister
>>>>>> http://www.math.clemson.edu/~heister/
>>>>>> _______________________________________________
>>>>>> Aspect-devel mailing list
>>>>>> Aspect-devel at geodynamics.org
>>>>>> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/aspect-devel
>>>>>>_______________________________________________
>>>>> Aspect-devel mailing list
>>>>> Aspect-devel at geodynamics.org
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>>>>
>>>> _______________________________________________
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>>>
>>>
>>>
>>> --
>>> Timo Heister
>>> http://www.math.clemson.edu/~heister/
>>> _______________________________________________
>>> Aspect-devel mailing list
>>> Aspect-devel at geodynamics.org
>>> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/aspect-devel
>>>
>>
>> _______________________________________________
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>
>
> --
> Timo Heister
> http://www.math.clemson.edu/~heister/
> _______________________________________________
> Aspect-devel mailing list
> Aspect-devel at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/aspect-devel
>
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