[aspect-devel] Aspect-devel Digest, Vol 77, Issue 20

Wed Apr 25 09:09:14 PDT 2018

1. Can you show the output of "ls -al ." inside the "tests" folder
inside your "build" folder?

2. What happens if you do

cd tests
../aspect additional_outputs.x.prm

?

3. Can you run other aspect examples like cookbooks/convection-box.prm ?

On Wed, Apr 25, 2018 at 11:39 AM, E.M. Dragowsky <dragowsky at case.edu> wrote:
> Hi, John, Timo --
>
> Thanks for your comments. I'm back in the office and able to resume work on
> this.
>
> I did perform the two steps as suggested:
> [mrd20 at comp163t build]$ make setup_tests
> Enabling all tests ...
> Added 414 tests.
> Built target setup_tests
> [mrd20 at comp163t build]$ make test -j4
> Running tests...
> Test project /home/mrd20/src/rider/aspect/build
>         Start   1: additional_outputs
>   1/414 Test   #1: additional_outputs
> .............................................***Timeout 600.04 sec
>         Start   2: additional_outputs_02
>
>
> The time-out problem persists. Output from ctest -R additional_tests -VV
> follows:
> [mrd20 at comp163t build]$ ctest -R additional_outputs -VV
> UpdateCTestConfiguration  from
> :/home/mrd20/src/rider/aspect/build/DartConfiguration.tcl
>  Add coverage exclude regular expressions.
> SetCTestConfiguration:CMakeCommand:/usr/local/base/8.0/bin/cmake
> UpdateCTestConfiguration  from
> :/home/mrd20/src/rider/aspect/build/DartConfiguration.tcl
> Test project /home/mrd20/src/rider/aspect/build
> Constructing a list of tests
> Done constructing a list of tests
> Updating test list for fixtures
> Added 0 tests to meet fixture requirements
> Checking test dependency graph...
> Checking test dependency graph end
> test 1
>     Start 1: additional_outputs
>
> 1: Test command: /usr/local/base/8.0/bin/cmake
> "-DBINARY_DIR=/home/mrd20/src/rider/aspect/build"
> "-DTESTNAME=tests.additional_outputs" "-DERROR="Test additional_outputs
> failed"" "-P" "/home/mrd20/src/rider/aspect/tests/run_test.cmake"
> 1: Test timeout computed to be: 600
>
>
>
> Cheers,
> ~ Em
>
>
>
> On Sat, Apr 21, 2018 at 1:19 PM, <aspect-devel-request at geodynamics.org>
> wrote:
>>
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>> Today's Topics:
>>
>>    1. Re: aspect-1.5 post-install tests (E.M. Dragowsky)
>>    2. Re: aspect-1.5 post-install tests (John Naliboff)
>>    3. Re: aspect-1.5 post-install tests (Timo Heister)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 20 Apr 2018 16:41:14 -0400
>> From: "E.M. Dragowsky" <dragowsky at case.edu>
>> To: aspect-devel at geodynamics.org
>> Subject: Re: [aspect-devel] aspect-1.5 post-install tests
>> Message-ID:
>>
>> <CAPbGgMzxSG=rYUUBD+XtZh+D66c4sXi_t+m4MSgqVnSWz=Etxg at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi, Timo --
>>
>> Thanks for the suggestion. Literally following the instructions:
>>
>> 1. git clone -b branch https:....
>> 2. mkdir build
>> 3. cd build
>> 4. ccmake ..
>> 5. make -j 6
>>
>> resulted in an aspect binary. Then
>>
>> 6. 'make test' resulted in the test timing out. Processes for aspect,
>> run_test.sh and ctest were all started, and persisted for 10 minutes. The
>> output to the Testing/Temporary/LastLog.tmp was as follows:
>>
>> Start testing: Apr 20 16:17 EDT
>> ----------------------------------------------------------
>> 1/414 Testing: additional_outputs
>> 1/414 Test: additional_outputs
>> Command: "/usr/local/base/8.0/bin/cmake"
>> "-DBINARY_DIR=/home/mrd20/src/rider/aspect/build"
>> "-DTESTNAME=tests.additional_outputs" "-DERROR="Test additional_outputs
>> failed"" "-P" "/home/mrd20/src/rider/aspect/tests/run_test.cmake"
>> Directory: /home/mrd20/src/rider/aspect/build/tests
>> "additional_outputs" start time: Apr 20 16:17 EDT
>> Output:
>> ----------------------------------------------------------
>> <end of output>
>> Test time = 600.03 sec
>> ----------------------------------------------------------
>> Test Failed.
>>
>> At least it's a new failure mode for me ;)
>> Perhaps I should revert to a cmake configuration that does not prepare all
>> tests.
>>
>> I work in the HPC group at CWRU, and am not an aspect practitioner.  I'll
>> be away from work until next Wednesday, and look forward to any further
>> guidance. Ideally, there could be a reference that allows to check the
>> details of the cmake/ctest configuration settings....
>>
>> I'll also look for an alternative (manual) test to perform from the manual
>> just to ensure that aspect binary will run given inputs.
>>
>> Best regards,
>> ~ Emily
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>> ------------------------------
>>
>> Message: 2
>> Date: Fri, 20 Apr 2018 09:35:31 -0700
>> From: John Naliboff <jbnaliboff at ucdavis.edu>
>> To: aspect-devel at geodynamics.org
>> Subject: Re: [aspect-devel] aspect-1.5 post-install tests
>> Message-ID: <b96decd5-d445-78ba-fa5c-cf2a46697c2d at ucdavis.edu>
>> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>>
>> Hi EM,
>>
>> After building ASPECT using "make", the steps to setup and run the test
>> suite are
>>      1. make setup_tests (enables tests)
>>      2a. make test (runs quick_mpi; running this command a second time
>> runs the full test suite)
>>      2b. ctest -R "test_name" (Runs tests containing the string
>> "test_name")
>>
>>  From your output below, it looks like "make setup_tests" may not have
>> been run? If that does not work, can you resend the new output?
>>
>> Cheers,
>> John
>>
>> On 04/20/2018 07:07 AM, E.M. Dragowsky wrote:
>> > Hi, everyone --
>> >
>> > I need help with the make and run of the aspect tests. I seem to be
>> > overlooking configuration details, but it's not intentional -- I'm
>> > having trouble getting a handle on how to engage with either make or
>> > cmake/ctest, and have probably convolved steps for the use of the two
>> > approaches.
>> >
>> > I can build the debug version of aspect-1.5, and that is rather
>> > straightforward. This is being done on a local computing cluster, and
>> > working with gcc/6.3.0 and openmpi/2.0.1, MKL/17 and Lapack/3.7.0
>> > from the system, with the p4est, Trilinos and dealii built in my user
>> > directory. I'm following the in-source build, using 'ccmake .' to
>> > configure and generate the structures supporting compiling and linking
>> > the code through 'make'.
>> >
>> > When trying to use 'ctest -V -R quick_mpi', the test source
>> > directories are not found.
>> > Here is the detailed output:
>> >  [mrd20 at comp234t build-debug]$ ctest -V -R quick_mpi
>> > UpdateCTestConfiguration  from
>> > :/home/mrd20/src/rider/aspect-1.5.0/build-debug/DartConfiguration.tcl
>> >  Add coverage exclude regular expressions.
>> > SetCTestConfiguration:CMakeCommand:/usr/local/base/8.0/bin/cmake
>> > UpdateCTestConfiguration  from
>> > :/home/mrd20/src/rider/aspect-1.5.0/build-debug/DartConfiguration.tcl
>> > Test project /home/mrd20/src/rider/aspect-1.5.0/build-debug
>> > Constructing a list of tests
>> > Done constructing a list of tests
>> > Updating test list for fixtures
>> > Added 0 tests to meet fixture requirements
>> > Checking test dependency graph...
>> > Checking test dependency graph end
>> > test 311
>> >     Start 311: quick_mpi
>> >
>> > 311: Test command: /usr/local/base/8.0/bin/cmake
>> > "-DBINARY_DIR=/home/mrd20/src/rider/aspect-1.5.0/build-debug"
>> > "-DTESTNAME=tests.quick_mpi" "-DERROR="Test quick_mpi failed"" "-P"
>> > "/home/mrd20/src/rider/aspect-1.5.0/build-debug/tests/run_test.cmake"
>> > 311: Test timeout computed to be: 600
>> > *311: CMake Error: The source directory
>> > "/home/mrd20/src/rider/aspect-1.5.0/build-debug/tests.quick_mpi" does
>> > not exist.*
>> > 311: Specify --help for usage, or press the help button on the CMake
>> > GUI.
>> > 311: *** "Test quick_mpi failed": ***
>> > 311: CMake Error at run_test.cmake:13 (MESSAGE):
>> > 311:   message called with incorrect number of arguments
>> > 311:
>> > 311:
>> > 1/1 Test #311: quick_mpi ........................***Failed    0.02 sec
>> >
>> >
>> > I have tried editing tests/CMakeList.txt, to provide a path to these
>> > test files, e.g.:
>> > ../build-debug/tests/CMakeFiles/tests.quick_mpi
>> >
>> >
>> > After rerunning 'make setup_tests', this results in an error for each
>> > test, 'Error: could not load cache'
>> >
>> > I suspect there are environment variables to set, and yet I can't
>> > seem to puzzle out how to properly move forward.
>> > Best wishes,
>> > ~ Em
>> >
>> >
>> >
>> >
>> > --
>> > E.M. Dragowsky, Ph.D.
>> > Research Computing -- UTech
>> > Case Western Reserve University
>> > (216) 368-0082
>> >
>> >
>> > _______________________________________________
>> > Aspect-devel mailing list
>> > Aspect-devel at geodynamics.org
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>> ------------------------------
>>
>> Message: 3
>> Date: Sat, 21 Apr 2018 13:25:57 -0400
>> From: Timo Heister <heister at clemson.edu>
>> To: aspect-devel <aspect-devel at geodynamics.org>
>> Subject: Re: [aspect-devel] aspect-1.5 post-install tests
>> Message-ID:
>>
>> <CAMRj59H2heZP7dctLmMit4b0O-3p0CE9TmC0yvaJRTgcghOa2Q at mail.gmail.com>
>> Content-Type: text/plain; charset="UTF-8"
>>
>> > From your output below, it looks like "make setup_tests" may not have
>> > been
>> > run? If that does not work, can you resend the new output?
>>
>> setup_tests is only enabling  the ENABLE_ALL_TESTS thing, so it is not
>> necessary here.
>>
>>
>>
>> --
>> Timo Heister
>> http://www.math.clemson.edu/~heister/
>>
>>
>> ------------------------------
>>
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>> ------------------------------
>>
>> End of Aspect-devel Digest, Vol 77, Issue 20
>> ********************************************
>
>
>
>
> --
> E.M. Dragowsky, Ph.D.
> Research Computing -- UTech
> Case Western Reserve University
> (216) 368-0082
>
> _______________________________________________
> Aspect-devel mailing list
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-- 
Timo Heister
http://www.math.clemson.edu/~heister/