[aspect-devel] error when writing checkpoint files

[Magali Billen]

hello,
I have encountered an error when turning checkpointing on. The program aborts with errors related to Triangulation and p4est
 :-(

I have attached the output log and the parameter file.  I’ve pasted a snippet of the error below, which appears exactly at the timestep
when the checkpointing should be written. There are only two files related to checkpointing started in the output directory restart.mesh and restart.mesh.info

This uses my module for the material module ( I modified a version of visco_plastic.cc to read in and use some parameters, I didn’t
change anything related to output - at least not on purpose. The module works in all other ways in terms of normal visualization output).
And, based on the error messages, I don’t think this could be due something with the module).

- Magali



SIGABRT received
SIGABRT received
[c12-16:24102] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7f55406e4890]
[c12-16:24102] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f553f9dbe97]
[c12-16:24102] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f553f9dd801]
[c12-16:24102] [ 3] /share/apps/cig/dealii/dealii-9.0.0/install/p4est-2.0/DEBUG/lib/libsc-2.0.so(sc_abort_verbose+0x0)[0x7f553f42a390]
[c12-16:24102] [ 4] /share/apps/cig/dealii/dealii-9.0.0/install/p4est-2.0/DEBUG/lib/libsc-2.0.so(sc_abort+0xd)[0x7f553f42a17b]
[c12-16:24102] [ 5] /share/apps/cig/dealii/dealii-9.0.0/install/p4est-2.0/DEBUG/lib/libsc-2.0.so(sc_abort_verbosef+0x0)[0x7f553f42a424]
[c12-16:24102] [ 6] /share/apps/cig/dealii/dealii-9.0.0/install/p4est-2.0/DEBUG/lib/libp4est-2.0.so(p4est_save_ext+0x688)[0x7f553f6842c2]
[c12-16:24102] [ 7] /share/apps/cig/dealii/dealii-9.0.0/install/p4est-2.0/DEBUG/lib/libp4est-2.0.so(p4est_save+0x2b)[0x7f553f683c37]
[c12-16:24102] [ 8] /share/apps/cig/dealii/dealii-9.0.0/install/deal.II-v9.0.0/lib/libdeal_II.g.so.9.0.0(_ZNK6dealii8parallel11distributed13TriangulationILi2ELi2EE4saveEPKc+0x35a)[0x7f554a67fe74]
[c12-16:24102] [ 9] /home/billen/AspectProjects/aspect/build/aspect(_ZN6aspect9SimulatorILi2EE15create_snapshotEv+0x51e)[0x5653d3c04a9e]
[c12-16:24102] [10] /home/billen/AspectProjects/aspect/build/aspect(_ZN6aspect9SimulatorILi2EE22maybe_write_checkpointElSt4pairIbbE+0x75)[0x5653d3c72165]
[c12-16:24102] [11] /home/billen/AspectProjects/aspect/build/aspect(_ZN6aspect9SimulatorILi2EE3runEv+0x10c1)[0x5653d3c3aa7b]
[c12-16:24102] [12] /home/billen/AspectProjects/aspect/build/aspect(_Z13run_simulatorILi2EEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbb+0x117)[0x5653d3812709]
[c12-16:24102] [13] /home/billen/AspectProjects/aspect/build/aspect(main+0x4df)[0x5653d37f1b21]
[c12-16:24102] [14] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f553f9beb97]
[c12-16:24102] [15] /home/billen/AspectProjects/aspect/build/aspect(_start+0x2a)[0x5653d365d6ea]
[c12-16:24102] *** End of error message ***

____________________________________________________________
Professor of Geophysics 
Earth & Planetary Sciences Dept., UC Davis
Davis, CA 95616
2129 Earth & Physical Sciences Bldg.
Office Phone: (530) 752-4169
http://magalibillen.faculty.ucdavis.edu

Currently on Sabbatical at Munich University (LMU)
Department of Geophysics (PST + 9 hr)

Avoid implicit bias - check before you submit: 
http://www.tomforth.co.uk/genderbias/
___________________________________________________________

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