[aspect-devel] Problem compiling Aspect on Tacc-Stampede2

FELIPE ORELLANA ROVIROSA f_orellana at berkeley.edu
Tue May 8 19:05:28 PDT 2018


 Hi John,

    Now I am back in the saddle.

    OK, I will proceed linking to your dealii. This linking may be
problematic..

    Then I will try to install my own dealii as I did long ago.

cheers,
Felipe

On Mon, May 7, 2018 at 3:01 PM, John Naliboff <jbnaliboff at ucdavis.edu>
wrote:

> Hi Felipe,
>
> I just installed ASPECT v1.5 with the one of the versions of deal.II
> (8.5.1) I built a while back. For now, perhaps try building ASPECT by
> linking to the version of deal.II on my account? Instructions to do this
> are at the bottom of the email.
>
> However, a number of things may change in the final Stampede2 installation
> instructions. For example, I get a number of warnings related to the
> version of BOOST (Stampede2 module). Linking to my version of deal.II may
> also not work (during installation or running a model) and please let me
> know if this is the case.
>
> I'll have the instructions go through a round of review through an
> existing issue (https://github.com/geodynamics/aspect/issues/1838), and
> once everyone is happy I'll add the instructions to the ASPECT wiki:
> https://github.com/geodynamics/aspect/wiki. From there, we can also have
> the TACC folks build a deal.II 8.5.1 module for ASPECT.
>
> Cheers,
> John
>
> *ASPECT Installations Instructions for Stampede2** using pre-built
> deal.II 8.5.1 (***not guaranteed to work****)*
> 1. Start idev session
>      idev -p skx-dev -N 1 -n 48 -m 60
>
> 2. Make sure following modules are loaded
>      gcc/7.1.0 impi/17.0.3 mkl/17.0.4 python/2.7.13 boost/1.64 swig/3.0.12
> cmake/3.8.2
>      phdf5/1.8.16 parallel-netcdf/4.3.3.1
>
> 3. Set cc and cxx compiler enivornment variables
>      export CC="${TACC_IMPI_BIN}"/mpicc; export
> CXX="${TACC_IMPI_BIN}"/mpicxx
>
> 4. Configure (be sure to add in the correct path to your ASPECT
> installation folder)
>      cmake \
>        -DDEAL_II_DIR=/work/01038/jboff/stampede2/software/gcc-
> 7.1.0/dealii/v8.5.1/install/lib/cmake \
>        -DCMAKE_INSTALL_PREFIX=""PATH_TO_YOUR_ASPECT_FOLDER" \
>        -DCMAKE_BUILD_TYPE=Release .
>
> 5. Build
>      make -j32
>
>
>
> On 05/03/2018 12:05 PM, FELIPE ORELLANA ROVIROSA wrote:
>
>
>  Hi Timo and John,
>
>      Thanks a loooooot for your support.
>
>      I understand. There is a problem with dealii in Stampede2.
>
>      I installed dealii in my account on Stampede1 long ago, and it was
> kind of a big task for me.
>
>      OK, I will wait for you John. In that way we will all be on the same
> track.
>
> When you proceed, let me know if I can help with anything.
>
> cheers,
> thank you very much,
>
> Felipe
>
>
>
>
>
> On Thu, May 3, 2018 at 9:40 AM, John Naliboff <jbnaliboff at ucdavis.edu>
> wrote:
>
>> Hi all,
>>
>> I'll coordinate with one of the TACC folks early next week and have a
>> general deal.II module (8.5.1) built using gcc. I installed both the
>> development and 8.5.0 on Stampede2 recently, so I'm not sure what the
>> issue. I'll also put up general instructions for the installation on the
>> ASPECT github page.
>>
>> Felipe - As soon as I rebuild deal.II on my account, you can build ASPECT
>> using that version until the general module is installed.
>>
>> Cheers,
>> John
>> On 05/03/2018 09:34 AM, Timo Heister wrote:
>>
>> login4.stampede2(364)$ find . -name trilinos_block*
>> ./include/deal.II/lac/trilinos_block_sparse_matrix.h
>>
>> so, the file 'trilinos_block_vector.h' does not exists in this library
>> collection  :(
>>
>> what should I do?
>>
>> This means the deal.II installation you are trying to use is broken.
>> Your options:
>> - install deal.II yourself
>> - ask the admins to fix the installation
>> - ask somebody else to install deal.II and use that installation (I am
>> planning to do that at some point this summer)
>>
>>
>>
>>
>>
>> _______________________________________________
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>> Aspect-devel at geodynamics.org
>> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/aspect-devel
>>
>
>
>
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