[aspect-devel] Problem compiling Aspect on Tacc-Stampede2

[John Naliboff]

Hi Felipe,

I just installed ASPECT v1.5 with the one of the versions of deal.II 
(8.5.1) I built a while back. For now, perhaps try building ASPECT by 
linking to the version of deal.II on my account? Instructions to do this 
are at the bottom of the email.

However, a number of things may change in the final Stampede2 
installation instructions. For example, I get a number of warnings 
related to the version of BOOST (Stampede2 module). Linking to my 
version of deal.II may also not work (during installation or running a 
model) and please let me know if this is the case.

I'll have the instructions go through a round of review through an 
existing issue (https://github.com/geodynamics/aspect/issues/1838), and 
once everyone is happy I'll add the instructions to the ASPECT wiki: 
https://github.com/geodynamics/aspect/wiki. From there, we can also have 
the TACC folks build a deal.II 8.5.1 module for ASPECT.

Cheers,
John

*ASPECT Installations Instructions for Stampede2**using pre-built 
deal.II 8.5.1 (***not guaranteed to work****)*
1. Start idev session
      idev -p skx-dev -N 1 -n 48 -m 60

2. Make sure following modules are loaded
      gcc/7.1.0 impi/17.0.3 mkl/17.0.4 python/2.7.13 boost/1.64 
swig/3.0.12 cmake/3.8.2
      phdf5/1.8.16 parallel-netcdf/4.3.3.1

3. Set cc and cxx compiler enivornment variables
      export CC="${TACC_IMPI_BIN}"/mpicc; export 
CXX="${TACC_IMPI_BIN}"/mpicxx

4. Configure (be sure to add in the correct path to your ASPECT 
installation folder)
      cmake \
-DDEAL_II_DIR=/work/01038/jboff/stampede2/software/gcc-7.1.0/dealii/v8.5.1/install/lib/cmake 
\
        -DCMAKE_INSTALL_PREFIX=""PATH_TO_YOUR_ASPECT_FOLDER" \
        -DCMAKE_BUILD_TYPE=Release .

5. Build
      make -j32



On 05/03/2018 12:05 PM, FELIPE ORELLANA ROVIROSA wrote:
>
>  Hi Timo and John,
>
>      Thanks a loooooot for your support.
>
>      I understand. There is a problem with dealii in Stampede2.
>
>      I installed dealii in my account on Stampede1 long ago, and it 
> was kind of a big task for me.
>
>      OK, I will wait for you John. In that way we will all be on the 
> same track.
>
> When you proceed, let me know if I can help with anything.
>
> cheers,
> thank you very much,
>
> Felipe
>
>
>
>
>
> On Thu, May 3, 2018 at 9:40 AM, John Naliboff <jbnaliboff at ucdavis.edu 
> <mailto:jbnaliboff at ucdavis.edu>> wrote:
>
>     Hi all,
>
>     I'll coordinate with one of the TACC folks early next week and
>     have a general deal.II module (8.5.1) built using gcc. I installed
>     both the development and 8.5.0 on Stampede2 recently, so I'm not
>     sure what the issue. I'll also put up general instructions for the
>     installation on the ASPECT github page.
>
>     Felipe - As soon as I rebuild deal.II on my account, you can build
>     ASPECT using that version until the general module is installed.
>
>     Cheers,
>     John
>     On 05/03/2018 09:34 AM, Timo Heister wrote:
>>>     login4.stampede2(364)$ find . -name trilinos_block*
>>>     ./include/deal.II/lac/trilinos_block_sparse_matrix.h
>>>
>>>     so, the file 'trilinos_block_vector.h' does not exists in this library
>>>     collection  :(
>>>
>>>     what should I do?
>>     This means the deal.II installation you are trying to use is broken.
>>     Your options:
>>     - install deal.II yourself
>>     - ask the admins to fix the installation
>>     - ask somebody else to install deal.II and use that installation (I am
>>     planning to do that at some point this summer)
>>
>>
>
>
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