[cig-commits] r5484 - mc/3D/CitcomS/trunk/doc/manual

[sue at geodynamics.org]

Author: sue
Date: 2006-12-06 12:59:49 -0800 (Wed, 06 Dec 2006)
New Revision: 5484

Modified:
   mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
Log:
a few text fixes in chapter 3

Modified: mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx
===================================================================
--- mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx	2006-12-06 20:59:22 UTC (rev 5483)
+++ mc/3D/CitcomS/trunk/doc/manual/citcoms.lyx	2006-12-06 20:59:49 UTC (rev 5484)
@@ -3066,7 +3066,7 @@
 
 \end_inset
 
- for full list).
+ for a full list).
  All parameters have sensible default values.
  Since you will likely want to specify the parameters of your CitComS.py
  runs, you will need to alter both computational details (such as the number
@@ -3077,8 +3077,9 @@
 \end_layout
 
 \begin_layout Standard
-Most of the properties you will set using CitComS.py have identical names
- as the parameters for the old CitComS, which is described in Appendix 
+Most of the properties you will set using CitComS.py have names which are
+ identical to the parameters for the old CitComS, which are described in
+ Appendix 
 \begin_inset LatexCommand \ref{cha:Appendix-A:-Input}
 
 \end_inset
@@ -3145,7 +3146,7 @@
 \begin_layout Standard
 Entering all those parameters via the command line involves the risk of
  typographical errors, which can lead to undesired results.
- You may find it easier to write a brief a 
+ You may find it easier to write a brief 
 \family typewriter
 .cfg
 \family default
@@ -3225,8 +3226,8 @@
 .pml
 \family default
  file format is intended for applications in which CitComS input files are
- generated by another program; for example, a GUI, web application, or a
- high-level structured editor.
+ generated by another program, e.g., a GUI, web application, or a high-level
+ structured editor.
  This file fomat will not be discussed further here.
  But if you are interested in using 
 \family typewriter
@@ -3240,7 +3241,7 @@
 \family typewriter
 .cfg
 \family default
- files can be used interchangeably: in the following discussion, a file
+ files can be used interchangeably; in the following discussion, a file
  with a 
 \family typewriter
 .pml
@@ -3371,6 +3372,8 @@
 \end_layout
 
 \begin_layout Standard
+\noindent
+\align center
 \begin_inset Float figure
 placement H
 wide false
@@ -3448,7 +3451,7 @@
 \end_inset
 
  9 nodal points.
- The model results are writen to files 
+ The model results are written to files 
 \family typewriter
 example0.*
 \family default
@@ -3479,7 +3482,11 @@
 \family typewriter
 PREFIX
 \family default
- is the CitComS installation directory).
+ is the 
+\family typewriter
+CitcomS
+\family default
+ installation directory).
  In this directory, you will find a configuration file equivalent the previous
  example: 
 \family typewriter
@@ -4278,9 +4285,12 @@
 $ citcoms example1.cfg
 \end_layout
 
-\begin_layout Standard
-This assumes your machine list has enough nodes for the simulation in question,
- of course!
+\begin_layout Quote
+
+\color red
+Warning: 
+\color default
+This assumes your machine list has enough nodes for the simulation in question.
 \end_layout
 
 \begin_layout Standard
@@ -4298,7 +4308,7 @@
 \end_layout
 
 \begin_layout Standard
-The settings which are important when using batch system are summarized
+The settings which are important when using a batch system are summarized
  in the sample configuration file which follows.
 \end_layout
 
@@ -4308,37 +4318,25 @@
 
 \begin_layout LyX-Code
 scheduler = lsf    ; the type of the installed batch system
-\end_layout
+\newline
 
-\begin_layout LyX-Code
-
-\end_layout
-
-\begin_layout LyX-Code
+\newline
 [CitcomS.lsf]
 \end_layout
 
 \begin_layout LyX-Code
 bsub-options = [-a mpich_gm]    ; special options for 'bsub'
-\end_layout
+\newline
 
-\begin_layout LyX-Code
-
-\end_layout
-
-\begin_layout LyX-Code
+\newline
 [CitcomS.launcher]
 \end_layout
 
 \begin_layout LyX-Code
 command = mpirun.lsf    ; 'mpirun' command to use on our cluster
-\end_layout
+\newline
 
-\begin_layout LyX-Code
-
-\end_layout
-
-\begin_layout LyX-Code
+\newline
 [CitcomS.job]
 \end_layout
 
@@ -4351,7 +4349,7 @@
 \family typewriter
 ~/.pyre/CitcomS/CitcomS.cfg
 \family default
- or a system-wide configuration file.
+ or in a system-wide configuration file.
  They can be overridden on the command line, where one typically specifies
  the job name and the allotted time for the job:
 \end_layout
@@ -4367,7 +4365,7 @@
 \end_layout
 
 \begin_layout Standard
-The number of nodes to allocate for the job is determined automatically
+The number of nodes to allocate for the job is determined automatically,
  based upon the simulation parameters.
 \end_layout