[cig-commits] r8072 - doc/CitcomS/manual
tan2 at geodynamics.org
tan2 at geodynamics.org
Mon Oct 1 13:43:53 PDT 2007
Author: tan2
Date: 2007-10-01 13:43:52 -0700 (Mon, 01 Oct 2007)
New Revision: 8072
Modified:
doc/CitcomS/manual/citcoms.lyx
Log:
Sync'd with the cookbook scripts
Modified: doc/CitcomS/manual/citcoms.lyx
===================================================================
--- doc/CitcomS/manual/citcoms.lyx 2007-10-01 20:38:22 UTC (rev 8071)
+++ doc/CitcomS/manual/citcoms.lyx 2007-10-01 20:43:52 UTC (rev 8072)
@@ -4190,7 +4190,7 @@
\begin_layout LyX-Code
[CitcomS]
\newline
-steps = 71
+steps = 70
\newline
\newline
@@ -4249,7 +4249,7 @@
\end_inset
(radius_inner).
- The model will run for 71 time steps and the code will output the results
+ The model will run for 70 time steps and the code will output the results
every 10 time steps.
\end_layout
@@ -6198,11 +6198,8 @@
\begin_layout Standard
For example, obtaining the node coordinates, temperature, and topography
- values over the entire surface of the sphere for time step
-\begin_inset Formula $100$
-\end_inset
-
- can be done easily with the following code snippet:
+ values over the entire surface of the sphere for time step 100 can be done
+ easily with the following code snippet:
\end_layout
\begin_layout LyX-Code
@@ -7827,13 +7824,13 @@
\end_layout
\begin_layout Standard
-The second set of parameters specifies the number of time steps (101), how
+The second set of parameters specifies the number of time steps (100), how
often full outputs of the computation are created (25), and the prefix
of output filenames (cookbook1).
\end_layout
\begin_layout LyX-Code
-steps = 101
+steps = 100
\newline
monitoringFrequency = 25
\newline
@@ -7891,7 +7888,7 @@
\newline
solver = full
\newline
-steps = 101 ; number of time steps
+steps = 100 ; number of time steps
\newline
\newline
@@ -8042,7 +8039,7 @@
cookbook2.cfg
\family default
.
- The parameters specify the number of time steps (61), the prefix of the
+ The parameters specify the number of time steps (60), the prefix of the
output filenames (
\family typewriter
cookbook2
@@ -8051,7 +8048,7 @@
\end_layout
\begin_layout LyX-Code
-steps = 61
+steps = 60
\newline
monitoringFrequency = 30
\newline
@@ -8104,6 +8101,8 @@
topvbc = 1
\newline
topvbxval = 100
+\newline
+topvbyval = 0
\end_layout
\begin_layout Standard
@@ -8132,7 +8131,7 @@
\begin_layout LyX-Code
[CitcomS]
\newline
-steps = 61 ; number of time steps
+steps = 60 ; number of time steps
\newline
\newline
@@ -8177,14 +8176,16 @@
\newline
topvbxval = 100
\newline
+topvbyval = 0
+\newline
\newline
# Modify the layout of the mesh.
\newline
-[CitcomS.solver.mesher]
+[CitcomS.so
+lver.mesher]
\newline
-npro
-cx = 2
+nprocx = 2
\newline
nprocy = 2
\newline
@@ -8196,28 +8197,29 @@
\newline
\newline
-# Impose a uniform velocity
- across the top surface.
+# Impose
+ a uniform velocity across the top surface.
\newline
[CitcomS.solver.bc]
\newline
-topvbc = 1
+topvbc =
+ 1
\newline
topvbxval = 100
\newline
-topvbyval
- = 0
+topvbyval = 0
\newline
\newline
-# In addition, set the initial temperature perturbation to zero.
+# In addition, set the initial temperature
+ perturbation to zero.
\newline
-[CitcomS.sol
-ver.ic]
+[CitcomS.solver.ic]
\newline
num_perturbations = 1
\newline
-perturbmag = 0.0
+perturbmag
+ = 0.0
\end_layout
\begin_layout Subsection
@@ -8555,11 +8557,11 @@
.
Set it to
\family typewriter
-on
+1
\family default
\family typewriter
-(solver.mesher.coor=on)
+(solver.mesher.coor=1)
\family default
in order to read the uneven mesh point coordinates from an input file (specifie
d by
@@ -8577,7 +8579,7 @@
\end_layout
\begin_layout LyX-Code
-coor = on
+coor = 1
\newline
coor_file = coor.dat
\end_layout
@@ -8659,7 +8661,7 @@
# Read uneven mesh
point coordinates from 'coor.dat'.
\newline
-coor = on
+coor = 1
\newline
coor_file = coor.dat
\newline
@@ -8866,7 +8868,7 @@
\begin_layout Standard
When
\family typewriter
-restart=on
+tic_method=-1
\family default
is set, the initial temperature field is read from setup files.
The files have the same naming scheme and format as the CitComS velo output,
@@ -8896,18 +8898,18 @@
\family default
will read file
\family typewriter
-./restart_files/cookbook5.velo.n.0
+./ic/cookbook5.velo.n.0
\end_layout
\begin_layout LyX-Code
-datadir_old = ./restart_files
+datadir_old = ./ic
\newline
datafile_old = cookbook5
\newline
-restart = on
+tic_method = -1
\newline
-solution_cycles
-_init = 0
+solution_cyc
+les_init = 0
\end_layout
\begin_layout Standard
@@ -8972,7 +8974,7 @@
[CitcomS.controller]
\newline
mo
-nitoringFrequency = 10 ; how often outputs are created
+nitoringFrequency = 100 ; how often outputs are created
\newline
\newline
@@ -8981,7 +8983,7 @@
datafile
= cookbook5
\newline
-datadir_old = ./restart_files
+datadir_old = ./ic
\newline
datafile_old = cookbook5
\newline
@@ -9017,8 +9019,7 @@
\newline
[CitcomS.solver.ic]
\newline
-restart =
- on
+tic_method = -1
\newline
solution_cycles_init = 0
\newline
@@ -9026,16 +9027,15 @@
\newline
[CitcomS.solver.mesher]
\newline
-coor = on
+coor = 1
\newline
coor_file = ./coor.dat
\newline
-npr
-ocx = 2
+nprocx = 1
\newline
-nprocy = 8
+nprocy = 2
\newline
-nprocz = 4
+nprocz = 1
\newline
nodex = 17
\newline
@@ -9045,8 +9045,7 @@
\newline
theta_min = 1.47
\newline
-theta_ma
-x = 1.67
+theta_max = 1.67
\newline
fi_min = 0
\newline
@@ -9058,8 +9057,7 @@
\newline
[CitcomS.solver.visc]
\newline
-num_mat
- = 4
+num_mat = 4
\newline
visc0 = 100,0.003,1,2
\newline
@@ -9454,17 +9452,9 @@
\family typewriter
tracer_ic_method=2
\family default
- or
+, each processor will read the location (and flavors; see next paragraph)
+ of the tracers from the file specified by
\family typewriter
-restart=on
-\family default
- (in the
-\family typewriter
-CitcomS.solver.ic
-\family default
- section), each processor will read the location (and flavors; see next
- paragraph) of the tracers from the file specified by
-\family typewriter
datafile_old
\family default
(in the
@@ -9567,24 +9557,11 @@
\family typewriter
tracer_ic_method=2
\family default
- or
-\family typewriter
-restart=on
-\family default
- (in the
-\family typewriter
-CitcomS.solver.ic
-\family default
- section), the code will read in the location of the tracers, as well as
- the initial sum of the bulk composition, from the previous run.
- One can reset the initial sum of the bulk composition with the current
- sum by turning on this parameter:
+, the code will read in the location of the tracers, as well as the initial
+ sum of the bulk composition, from the previous run.
+
\end_layout
-\begin_layout LyX-Code
-reset_initial_composition = 0
-\end_layout
-
\begin_layout Standard
The regular grid is an auxiliary grid that helps locate the tracers
\begin_inset LatexCommand cite
@@ -9639,7 +9616,7 @@
\newline
solver = full
\newline
-steps = 31 ; number of time steps
+steps = 30 ; number of time steps
\newline
\newline
@@ -9696,10 +9673,10 @@
\newline
[CitcomS.solver.tracer]
\newline
-tracer = 1
+tracer = on
\newline
-tracer_ic_met
-hod = 0
+tracer_ic_me
+thod = 0
\newline
tracers_per_element = 20
\newline
@@ -9707,10 +9684,10 @@
\newline
\newline
-tracer_flavors = 2
+tracer_flavors =
+ 2
\newline
-ic_metho
-d_for_flavors = 0
+ic_method_for_flavors = 0
\newline
z_interface = 0.7
\newline
@@ -9718,34 +9695,32 @@
\newline
chemical_buoyancy = 1
\newline
-buoy_type = 1
+buoy_type
+ = 1
\newline
-buoyancy_rati
-o = 0.4
+buoyancy_ratio = 0.4
\newline
-reset_initial_composition = 0
-\newline
\newline
regular_grid_deltheta = 1.0
\newline
-regular_grid_delphi
- = 1.0
+regular_grid_delphi = 1.0
\newline
\newline
\newline
-# Assign the viscosities.
+#
+ Assign the viscosities.
\newline
[CitcomS.solver.visc]
\newline
VISC_UPDATE = on
\newline
-num_mat
- = 4
+num_mat = 4
\newline
-visc0 = 1,1,1,1
+visc0
+ = 1,1,1,1
\newline
TDEPV = on
\newline
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