[cig-commits] r19347 - in seismo/3D/SPECFEM3D/trunk: doc/USER_MANUAL examples examples/Mount_StHelens examples/Mount_StHelens/REF_SEIS examples/Mount_StHelens/in_data_files src/shared src/specfem3D
danielpeter at geodynamics.org
danielpeter at geodynamics.org
Mon Jan 9 17:20:11 PST 2012
Author: danielpeter
Date: 2012-01-09 17:20:11 -0800 (Mon, 09 Jan 2012)
New Revision: 19347
Added:
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X10.DB.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X20.DB.HXZ.semd
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X30.DB.HXZ.semd
Modified:
seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D.pdf
seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D.tex
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/boundary_definition.py
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/cubit2specfem3d.py
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/in_data_files/CMTSOLUTION
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/process.sh
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/read_topo.py
seismo/3D/SPECFEM3D/trunk/examples/README
seismo/3D/SPECFEM3D/trunk/src/shared/check_mesh_resolution.f90
seismo/3D/SPECFEM3D/trunk/src/shared/write_VTK_data.f90
seismo/3D/SPECFEM3D/trunk/src/specfem3D/model_update.f90
seismo/3D/SPECFEM3D/trunk/src/specfem3D/read_mesh_databases.f90
Log:
updates example Mount_StHelens; adds mesh output for courant and minimum period; updates manual for xcheck_mesh_quality_CUBIT_Abaqus outputs
Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D.pdf
===================================================================
(Binary files differ)
Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D.tex 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D.tex 2012-01-10 01:20:11 UTC (rev 19347)
@@ -564,11 +564,12 @@
\begin{lyxcode}
{\small ./bin/xcheck\_mesh\_quality\_CUBIT\_Abaqus}{\small \par}
\end{lyxcode}
-to generate an AVS output file (\texttt{\small AVS\_meshquality.inp}
-in AVS UCD format) or OpenDX output file (\texttt{\small DX\_meshquality.}~\\
-\texttt{\small dx}) that can be used to investigate mesh quality,
-e.g, skewness of elements and a Gnuplot histogram (\texttt{\small mesh\_quality\_}~\\
-\texttt{\small histogram.txt}) that can be plotted with gnuplot (type
+to generate an
+%not supported: AVS output file (\texttt{\small AVS\_meshquality.inp} in AVS UCD format) or
+OpenDX output file (\texttt{\small DX\_mesh\_quality.dx})
+that can be used to investigate mesh quality, e.g. skewness of elements,
+and a Gnuplot histogram (\texttt{\small mesh\_quality\_histogram.txt})
+that can be plotted with gnuplot (type
`\texttt{\small gnuplot plot\_mesh\_quality\_histogram.gnu}'). The
histogram is also printed to the screen.
Analyze that skewness histogram of mesh elements to make sure no element has a skewness above approximately 0.75, otherwise the mesh is of poor quality (and if even a single element has a skewness value above 0.80, then you must definitely improve the mesh).
Added: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X10.DB.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X10.DB.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X10.DB.HXZ.semd 2012-01-10 01:20:11 UTC (rev 19347)
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Added: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X20.DB.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X20.DB.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X20.DB.HXZ.semd 2012-01-10 01:20:11 UTC (rev 19347)
@@ -0,0 +1,2500 @@
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Added: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X30.DB.HXZ.semd
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X30.DB.HXZ.semd (rev 0)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/REF_SEIS/X30.DB.HXZ.semd 2012-01-10 01:20:11 UTC (rev 19347)
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Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/boundary_definition.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/boundary_definition.py 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/boundary_definition.py 2012-01-10 01:20:11 UTC (rev 19347)
@@ -59,6 +59,8 @@
xmax_box=cubit.get_total_bounding_box("volume",list_vol)[1]
ymin_box=cubit.get_total_bounding_box("volume",list_vol)[3]
ymax_box=cubit.get_total_bounding_box("volume",list_vol)[4]
+
+
list_surf=cubit.parse_cubit_list("surface","all")
# for k in list_surf:
# center_point = cubit.get_center_point("surface", k)
@@ -96,40 +98,71 @@
print '## y length: ' + str(y_len)
print '## z length: ' + str(z_len)
- # tolerance parameters
- absorbing_surface_distance_tolerance=0.005
+ # debug
+ print '## xmin: ' + str(xmin_box)
+ print '## xmax: ' + str(xmax_box)
+ print '## ymin: ' + str(ymin_box)
+ print '## ymax: ' + str(ymax_box)
+ print '## zmin: ' + str(zmin_box)
+ print '## zmax: ' + str(zmax_box)
+
+ ############################################
+ ##
+ ## tolerance parameters
+ ##
+ ## modified for surface topography
+ ############################################
+ absorbing_surface_distance_tolerance=0.1
topographic_surface_distance_tolerance=0.1
- topographic_surface_normal_tolerance=0.1
+ topographic_surface_normal_tolerance=0.3
for k in list_surf:
center_point = cubit.get_center_point("surface", k)
+
+ #debug
+ print '##surface: ' + str(k)
+ print '## center point: ' + str(center_point)
+
if abs((center_point[0] - xmin_box)/x_len) <= absorbing_surface_distance_tolerance:
- absorbing_surf_xmin.append(k)
- absorbing_surf.append(k)
+ #debug
+ print '## xmin surface: ' + str(k)
+ absorbing_surf_xmin.append(k)
+ absorbing_surf.append(k)
elif abs((center_point[0] - xmax_box)/x_len) <= absorbing_surface_distance_tolerance:
- absorbing_surf_xmax.append(k)
- absorbing_surf.append(k)
+ #debug
+ print '## xmax surface: ' + str(k)
+ absorbing_surf_xmax.append(k)
+ absorbing_surf.append(k)
elif abs((center_point[1] - ymin_box)/y_len) <= absorbing_surface_distance_tolerance:
- absorbing_surf_ymin.append(k)
- absorbing_surf.append(k)
+ #debug
+ print '## ymin surface: ' + str(k)
+ absorbing_surf_ymin.append(k)
+ absorbing_surf.append(k)
elif abs((center_point[1] - ymax_box)/y_len) <= absorbing_surface_distance_tolerance:
- absorbing_surf_ymax.append(k)
- absorbing_surf.append(k)
+ #debug
+ print '## ymax surface: ' + str(k)
+ absorbing_surf_ymax.append(k)
+ absorbing_surf.append(k)
elif abs((center_point[2] - zmin_box)/z_len) <= absorbing_surface_distance_tolerance:
- absorbing_surf_bottom.append(k)
- absorbing_surf.append(k)
+ #debug
+ print '## bottom surface: ' + str(k)
+ absorbing_surf_bottom.append(k)
+ absorbing_surf.append(k)
else:
- sbox=cubit.get_bounding_box('surface',k)
- dz=abs((sbox[7] - zmax_box)/z_len)
- normal=cubit.get_surface_normal(k)
- zn=normal[2]
- dn=abs(abs(zn)-1)
- #print '## surface element: ' + str(k)
- #print '## surface element: zn ' + str(zn)
- #print '## surface element: dn ' + str(dn)
- #print '## surface element: dz ' + str(dz)
- if dz <= topographic_surface_distance_tolerance and dn < topographic_surface_normal_tolerance:
- top_surf.append(k)
+ sbox=cubit.get_bounding_box('surface',k)
+ dz=abs((sbox[7] - zmax_box)/z_len)
+ normal=cubit.get_surface_normal(k)
+ zn=normal[2]
+ dn=abs(abs(zn)-1)
+ #debug
+ #print '## surface element: ' + str(k)
+ #print '## surface element: zn ' + str(zn)
+ #print '## surface element: dn ' + str(dn)
+ #print '## surface element: dz ' + str(dz)
+ if dz <= topographic_surface_distance_tolerance and dn < topographic_surface_normal_tolerance:
+ #debug
+ print '## topo surface: ' + str(k)
+ top_surf.append(k)
return absorbing_surf,absorbing_surf_xmin,absorbing_surf_xmax,absorbing_surf_ymin,absorbing_surf_ymax,absorbing_surf_bottom,top_surf
@@ -281,10 +314,11 @@
print 'error importing cubit'
import sys
sys.exit()
+
id_nodeset=cubit.get_next_nodeset_id()
id_block=cubit.get_next_block_id()
-
+ # creates command string
if obj == 'hex':
txt='hex in node in surface'
txt1='block '+str(id_block)+ ' '+ txt +' '+str(list(surf_list))
@@ -306,7 +340,9 @@
print "##block "+str(id_block)+" name '"+name+"_notsupported (only hex,face,edge,node)'"
txt2=''
-
+ # executes commands
+ print "# command: " + txt1
+ print "# command: " + txt2
cubit.cmd(txt1)
cubit.cmd(txt2)
@@ -341,21 +377,55 @@
# model has parallel sides (e.g. a block model )
if parallel:
- # blocks for each side
+
+ # blocks for each side
+ if len(xmin) == 0:
+ print ""
+ print "no abs_xmin surface found, please create block manually..."
+ print ""
+ else:
build_block_side(xmin,entity+'_abs_xmin',obj=entity)
+
+ # blocks for each side
+ if len(xmax) == 0:
+ print ""
+ print "no abs_xmax surface found, please create block manually..."
+ print ""
+ else:
build_block_side(xmax,entity+'_abs_xmax',obj=entity)
+
+ # blocks for each side
+ if len(ymin) == 0:
+ print ""
+ print "no abs_xmin surface found, please create block manually..."
+ print ""
+ else:
build_block_side(ymin,entity+'_abs_ymin',obj=entity)
+
+ # blocks for each side
+ if len(ymax) == 0:
+ print ""
+ print "no abs_ymax surface found, please create block manually..."
+ print ""
+ else:
build_block_side(ymax,entity+'_abs_ymax',obj=entity)
+
+ # blocks for each side
+ if len(bottom) == 0:
+ print ""
+ print "no abs_bottom surface found, please create block manually..."
+ print ""
+ else:
build_block_side(bottom,entity+'_abs_bottom',obj=entity)
- # block for all sides together
- # NOTE:
- # this might fail in some CUBIT versions, when elements are already
- # assigned to other blocks
- try:
- build_block_side(surf,entity+'_abs',obj=entity)
- except:
- print "no combined surface with all sides created"
+ # block for all sides together
+ # NOTE:
+ # this might fail in some CUBIT versions, when elements are already
+ # assigned to other blocks
+ try:
+ build_block_side(surf,entity+'_abs',obj=entity)
+ except:
+ print "no combined surface with all sides created"
else:
# arbitrary geometry
@@ -409,6 +479,16 @@
#block 2 attribute index 2 1
#block 2 attribute index 3 2
+# to create block manually:
+#
+# use a commands like:
+#
+# e.g. surface with topography
+# block 2 face in surface 6
+# block 2 name "face_topo"
+#
+# e.g. all surface which are absorbing
+# block 3 face in surface 1 2 3 4 5
+# block 2 name "face_abs"
-
Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/cubit2specfem3d.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/cubit2specfem3d.py 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/cubit2specfem3d.py 2012-01-10 01:20:11 UTC (rev 19347)
@@ -643,8 +643,9 @@
filename=absname+'_bottom'
normal=(0,0,-1)
elif re.search('abs',name):
- print " ...face_abs - not used so far..."
- continue
+ #print " ...face_abs - not used so far..."
+ filename=absname+'_all'
+ absflag=True
else:
continue
# opens file
Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/in_data_files/CMTSOLUTION
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/in_data_files/CMTSOLUTION 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/in_data_files/CMTSOLUTION 2012-01-10 01:20:11 UTC (rev 19347)
@@ -1,7 +1,7 @@
PDE 1999 01 01 00 00 00.00 67000 67000 -25000 4.2 4.2 hom_explosion
event name: hom_explosion
time shift: 0.0000
-half duration: 0.5
+half duration: 1.5
latitude: 46.197
longitude: -122.186
depth: 5.0
Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/process.sh
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/process.sh 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/process.sh 2012-01-10 01:20:11 UTC (rev 19347)
@@ -18,7 +18,7 @@
currentdir=`pwd`
echo
-echo "(will take about 15 minutes)"
+echo "(will take about 5 minutes)"
echo
# sets up directory structure in current example directoy
Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/read_topo.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/read_topo.py 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/read_topo.py 2012-01-10 01:20:11 UTC (rev 19347)
@@ -22,15 +22,19 @@
#############################################################
# converts xyz to utm
-os.system('./convert_lonlat2utm.pl ptopo.mean.xyz 10 > ptopo.mean.utm ')
+#os.system('./convert_lonlat2utm.pl ptopo.mean.xyz 10 > ptopo.mean.utm ')
# reads in points
print '#reading from file: ',inputFile
-count = 0
cubit.cmd('reset')
cubit.cmd('echo off')
+cubit.cmd('Graphics Pause')
+
+
# creates point vertices
+print '#creating points...'
+count = 0
for line in fileinput.input( inputFile ):
count = count + 1
#print '# '+str(count)+' point: '+line
@@ -42,15 +46,23 @@
#print '#point: ',xyz
cubit.cmd('create vertex '+ xyz )
fileinput.close()
+print '#done points: '+str(count)
+print ''
+
# creates smooth spline curves for surface
+print '#creating curves...'
+countcurves = 0
for i in range(1,count+1):
if i > 1 :
if i % nstep == 0 :
+ countcurves = countcurves + 1
cubit.cmd('create curve spline vertex '+str(i-nstep+1) + ' to ' + str(i) )
-cubit.cmd('echo on')
+print '#done curves: '+str(countcurves)
+print ''
# creates surface
+print '#creating skin surface...'
cubit.cmd('create surface skin curve all')
# cleans up
@@ -58,7 +70,9 @@
cubit.cmd('delete vertex all')
cubit.cmd('delete curve all')
-print '#done points: '+str(count)
+print '#done cleaning up'
+cubit.cmd('Display')
+cubit.cmd('echo on')
# saves and exports surface
# cubit file (uses ACIS file format)
@@ -66,3 +80,5 @@
# export surface as STL file
cubit.cmd('export stl ascii "topo.stl" overwrite')
+print '#exporting done'
+print '#finished'
Modified: seismo/3D/SPECFEM3D/trunk/examples/README
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/README 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/examples/README 2012-01-10 01:20:11 UTC (rev 19347)
@@ -23,6 +23,8 @@
- noise_tomography/: uses the homogeneous_halfspace model for noise kernel simulations
+- Mount_StHelens/: a model with topography data included
+
- homogeneous_poro/: a model using poroelastic material
***NOTE*** because of the poroelastic implementation, even in an acoustic/elastic case, the file nummaterial_poroelastic_file must be present in the MESH/ directory. Need to had a dummy file in cubit2specfem3d.py [CM - Oct. 2011]
Modified: seismo/3D/SPECFEM3D/trunk/src/shared/check_mesh_resolution.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/shared/check_mesh_resolution.f90 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/src/shared/check_mesh_resolution.f90 2012-01-10 01:20:11 UTC (rev 19347)
@@ -26,7 +26,8 @@
subroutine check_mesh_resolution(myrank,NSPEC_AB,NGLOB_AB,ibool,xstore,ystore,zstore, &
kappastore,mustore,rho_vp,rho_vs, &
- DT, model_speed_max,min_resolved_period )
+ DT, model_speed_max,min_resolved_period, &
+ LOCAL_PATH,SAVE_MESH_FILES )
! check the mesh, stability and resolved period for acoustic / elastic domains
!
@@ -43,6 +44,9 @@
double precision :: DT
real(kind=CUSTOM_REAL) :: model_speed_max,min_resolved_period
+ character(len=256):: LOCAL_PATH
+ logical :: SAVE_MESH_FILES
+
! local parameters
real(kind=CUSTOM_REAL) :: vpmin,vpmax,vsmin,vsmax,vpmin_glob,vpmax_glob,vsmin_glob,vsmax_glob
real(kind=CUSTOM_REAL) :: distance_min,distance_max,distance_min_glob,distance_max_glob
@@ -68,10 +72,14 @@
!********************************************************************************
!real(kind=CUSTOM_REAL),parameter :: NELEM_PER_WAVELENGTH = 1.5
-
logical :: has_vs_zero
real(kind=CUSTOM_REAL),dimension(1) :: tmp_val
+ ! debug: for vtk output
+ real(kind=CUSTOM_REAL),dimension(:),allocatable :: tmp1,tmp2
+ integer:: ier
+ character(len=256) :: filename,prname
+
! initializations
if( DT <= 0.0d0) then
DT_PRESENT = .false.
@@ -98,6 +106,15 @@
has_vs_zero = .false.
+ ! debug: for vtk output
+ if( SAVE_MESH_FILES ) then
+ allocate(tmp1(NSPEC_AB),stat=ier)
+ allocate(tmp2(NSPEC_AB),stat=ier)
+ if( ier /= 0 ) stop 'error allocating array tmp'
+ tmp1(:) = 0.0
+ tmp2(:) = 0.0
+ endif
+
! checks courant number & minimum resolved period for each grid cell
do ispec=1,NSPEC_AB
@@ -132,6 +149,9 @@
if( DT_PRESENT ) then
cmax = max( vpmax,vsmax ) * DT / distance_min
cmax_glob = max(cmax_glob,cmax)
+
+ ! debug: for vtk output
+ if( SAVE_MESH_FILES ) tmp1(ispec) = cmax
endif
! suggested timestep
@@ -163,6 +183,9 @@
!pmax = distance_max / min( vpmin,vsmin ) * NELEM_PER_WAVELENGTH
!pmax_glob = max(pmax_glob,pmax)
+ ! debug: for vtk output
+ if( SAVE_MESH_FILES ) tmp2(ispec) = pmax
+
enddo
! determines global min/max values from all cpu partitions
@@ -306,6 +329,24 @@
call bcast_all_cr(tmp_val,1)
min_resolved_period = tmp_val(1)
+ ! debug: for vtk output
+ if( SAVE_MESH_FILES ) then
+ call create_name_database(prname,myrank,LOCAL_PATH)
+ ! courant number
+ if( DT_PRESENT ) then
+ filename = trim(prname)//'res_courant_number'
+ call write_VTK_data_elem_cr(NSPEC_AB,NGLOB_AB, &
+ xstore,ystore,zstore,ibool, &
+ tmp1,filename)
+ endif
+ ! minimum period estimate
+ filename = trim(prname)//'res_minimum_period'
+ call write_VTK_data_elem_cr(NSPEC_AB,NGLOB_AB, &
+ xstore,ystore,zstore,ibool, &
+ tmp2,filename)
+ deallocate(tmp1,tmp2)
+ endif
+
end subroutine check_mesh_resolution
!
Modified: seismo/3D/SPECFEM3D/trunk/src/shared/write_VTK_data.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/shared/write_VTK_data.f90 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/src/shared/write_VTK_data.f90 2012-01-10 01:20:11 UTC (rev 19347)
@@ -470,3 +470,75 @@
end subroutine write_VTK_data_elem_vectors
+!=============================================================
+
+ subroutine write_VTK_data_elem_cr(nspec,nglob, &
+ xstore_dummy,ystore_dummy,zstore_dummy,ibool, &
+ elem_flag,prname_file)
+
+
+ implicit none
+
+ include "constants.h"
+
+ integer :: nspec,nglob
+
+ ! global coordinates
+ integer, dimension(NGLLX,NGLLY,NGLLZ,nspec) :: ibool
+ real(kind=CUSTOM_REAL), dimension(nglob) :: xstore_dummy,ystore_dummy,zstore_dummy
+
+ ! element flag array
+ real(kind=CUSTOM_REAL), dimension(nspec) :: elem_flag
+
+ ! file name
+ character(len=256) :: prname_file
+ !character(len=2), optional, intent(in) :: str_id
+
+ ! local parameters
+ integer :: ispec,i
+
+! write source and receiver VTK files for Paraview
+ !debug
+ !write(IMAIN,*) ' vtk file: '
+ !write(IMAIN,*) ' ',prname_file(1:len_trim(prname_file))//'.vtk'
+
+ open(IOVTK,file=prname_file(1:len_trim(prname_file))//'.vtk',status='unknown')
+ write(IOVTK,'(a)') '# vtk DataFile Version 3.1'
+ write(IOVTK,'(a)') 'material model VTK file'
+ write(IOVTK,'(a)') 'ASCII'
+ write(IOVTK,'(a)') 'DATASET UNSTRUCTURED_GRID'
+ write(IOVTK, '(a,i12,a)') 'POINTS ', nglob, ' float'
+ do i=1,nglob
+ write(IOVTK,'(3e18.6)') xstore_dummy(i),ystore_dummy(i),zstore_dummy(i)
+ enddo
+ write(IOVTK,*) ""
+
+ ! note: indices for vtk start at 0
+ write(IOVTK,'(a,i12,i12)') "CELLS ",nspec,nspec*9
+ do ispec=1,nspec
+ write(IOVTK,'(9i12)') 8,ibool(1,1,1,ispec)-1,ibool(NGLLX,1,1,ispec)-1,ibool(NGLLX,NGLLY,1,ispec)-1,ibool(1,NGLLY,1,ispec)-1,&
+ ibool(1,1,NGLLZ,ispec)-1,ibool(NGLLX,1,NGLLZ,ispec)-1,ibool(NGLLX,NGLLY,NGLLZ,ispec)-1,ibool(1,NGLLY,NGLLZ,ispec)-1
+ enddo
+ write(IOVTK,*) ""
+
+ ! type: hexahedrons
+ write(IOVTK,'(a,i12)') "CELL_TYPES ",nspec
+ write(IOVTK,*) (12,ispec=1,nspec)
+ write(IOVTK,*) ""
+
+ write(IOVTK,'(a,i12)') "CELL_DATA ",nspec
+ !if( present( str_id ) ) then
+ ! write(IOVTK,'(a)') "SCALARS elem_flag_"//str_id//" integer"
+ !else
+ ! write(IOVTK,'(a)') "SCALARS elem_flag integer"
+ !endif
+ write(IOVTK,'(a)') "SCALARS elem_val float"
+ write(IOVTK,'(a)') "LOOKUP_TABLE default"
+ do ispec = 1,nspec
+ write(IOVTK,*) elem_flag(ispec)
+ enddo
+ write(IOVTK,*) ""
+ close(IOVTK)
+
+
+ end subroutine write_VTK_data_elem_cr
Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/model_update.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/model_update.f90 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/model_update.f90 2012-01-10 01:20:11 UTC (rev 19347)
@@ -916,7 +916,8 @@
call check_mesh_resolution(myrank,NSPEC,NGLOB,ibool,&
xstore,ystore,zstore, &
kappastore_new,mustore_new,rho_vp_new,rho_vs_new, &
- -1.0d0, model_speed_max,min_resolved_period )
+ -1.0d0, model_speed_max,min_resolved_period, &
+ LOCAL_PATH,SAVE_MESH_FILES )
call sync_all()
Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/read_mesh_databases.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/read_mesh_databases.f90 2012-01-09 23:34:09 UTC (rev 19346)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/read_mesh_databases.f90 2012-01-10 01:20:11 UTC (rev 19347)
@@ -455,7 +455,8 @@
call check_mesh_resolution(myrank,NSPEC_AB,NGLOB_AB, &
ibool,xstore,ystore,zstore, &
kappastore,mustore,rho_vp,rho_vs, &
- DT,model_speed_max,min_resolved_period)
+ DT,model_speed_max,min_resolved_period, &
+ LOCAL_PATH,SAVE_MESH_FILES)
else if( POROELASTIC_SIMULATION ) then
allocate(rho_vp(NGLLX,NGLLY,NGLLZ,NSPEC_AB))
@@ -477,7 +478,8 @@
call check_mesh_resolution(myrank,NSPEC_AB,NGLOB_AB, &
ibool,xstore,ystore,zstore, &
kappastore,mustore,rho_vp,rho_vs, &
- DT,model_speed_max,min_resolved_period)
+ DT,model_speed_max,min_resolved_period, &
+ LOCAL_PATH,SAVE_MESH_FILES)
deallocate(rho_vp,rho_vs)
endif
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