[cig-commits] [commit] master's head updated: remove missing mineral database (2a12ed4)

[cig_noreply at geodynamics.org]

Repository : https://github.com/geodynamics/burnman

Branch 'master' now includes:

     a979bde Adding non-functional solidsolution.py
     4646fab Abbreviate kd
     6246665 Add Modified Tait EoS and expression for G
     d29f046 Added molar mass calculator and data table
     7b49197 Added endmember Gibbs with Landau, and a new test script.
     d696c99 Started work on Bragg-Williams order-disorder.
     db3af2d Continued work on Bragg-Williams order-disorder.
     9897b21 Attempts to locate tc-burnman discrepancies
     0bd6fe5 Implemented HP2011 Landau and Bragg-Williams order-disorder models for endmembers
     d8e5330 Added comment to warn that Cp, V where Landau/Bragg-Williams order-disorder is implemented are currently incorrect
     9596d37 Minor edit
     6744559 Implemented sample_pressure attribute for experimental data inversion
     5aeee09 Add interface for thermodynamic potentials
     91e92f9 Update name of gibbs function
     dcb438c Add einstein thermal model
     d136ccc Use einstein.py to do the heat capacity stuff, implement a few of the not-yet-completed thermodynamic functions
     3a7cc54 Remove unnecessary inheritance
     379dc42 Bugfixes
     61143d0 Add the ability to calculate Helmholtz and Gibbs free energies to SLB, and more generally to anything using the Debye model.
     891c5f0 Remove already inherited methods
     0173631 Calculate Gibbs and Helmholtz in the mineral class, but fail silently if they are not implemented/unable.
     3fd4238 First alpha of SolidSolution base class
     43d6979 Corrected sign of S excess
     e8a41f5 Added configurational entropy to solidsolution.py
     7286308 Rename to emphasize extensive quantity
     7431641 Added more attributes to the solidsolution class
     8e7ba31 Rejigged SolidSolution class
     bde5c26 Added check for endmember and solid solution member compositional equality
     8b38090 Documented and changed name of sample_pressure (now eos_pressure)
     5a825ac Changed comment blob for burnman.SolidSolution
     494f1dd Add pressure to the various EOSs that need it
     4e685fe Initial version of SolutionModel class, including one that does nothing, and IdealSolution class, a SymmetricVanLaar class, and an AsymmetricVanLaar class.  Still work to be done
     3414b8a Add missing file
     e0dc4ab Rename classes
     7adde8f Commented functions in processchemistry.py
     e385354 Patch up so that the new stuff works as a package
     a743951 Bug fixes
     dbfaa63 Move out of burnman directory
     ccc4f06 Add the enthalpy of solution benchmark
     c2a30cf Added compositional array construction
     26bdb24 Split configurational entropy from ideal gibbs
     1ddc4c0 Minor bug fix
     53e469c Fix typos
     db12d11 Start trying to do configurational entropy benchmark
     751c366 Bugfix
     a0acae0 Reproduce two of the curves from fig 3b
     ed83851 Use np.power
     54bfdc7 Temporary fix until ProcessSolidSolutionChemistry is fixed
     a7672d4 Bug fix for formula parsing
     e47cb7b Another bug fix for processchemistry.py
     4505983 Remove unnecessary ones.
     f4cc5f2 Variable change to ease comparison with diagram
     aec2338 Implemented endmember configurational entropies for disordered phases
     bee7cac Overlay screengrabs
     b18f1ef Add another configurational entropy example
     ce35392 Simplified configurational entropy calculation
     7929428 Finished ideal activity formulation
     2228a98 Changed zero equality for endmember occupancy to tolerance
     c70b6cd Widened compositional bounds on spinel entropy benchmark
     c9e4070 Added comment for origin of formula in benchmark
     b2d755e Bugfix
     7cabc48 Tweaked axes in solidsolution benchmarks
     43ef3b9 Emphasised the physical meaning of the normalisation constant in activity calculations
     39b3e83 Moved HP2011 test to tests directory
     84fbe9b Fixed Gibbs bug created last night
     b2549c6 Removed pressure as input variable to F(V,T) and volume as input variable to Gibbs(P,T)
     cdc75d9 Added P,T attributes and calcgibbs to solid solution class
     c376611 Allow multiple instances of same element in endmember formulae
     9125d96 Bugfix for entropy term in ideal_gibbs_excess, added partial gibbs functions
     00b57f4 Added set_method to solid solution initialisation, added partial gibbs function
     4ac0c70 Added temporary test for previously buggy gibbs excesses
     a5f1619 Use burnman.constants
     a8c6a1a Unify how R is imported
     b5e9ebb Added vacancies to atomic_masses.dat
     e43ade1 Updated process chemistry to accept fractions
     1529078 Add benchmark, and make bugfix associated with doing benchmark
     eb34fce Disorganized work on getting dGdN stuff working
     2041882 Add partial derivatives of gibbs to modified tait (H, S, Cp)
     60c42ef Added H, S, V calculations to solidsolution.py
     214f301 Bug fix
     a1dfe00 add self
     9c2a78f Farmed out endmember disorder functions, added preliminary solution properties
     aa99411 fix constants
     2148b32 add entropy to EOS, remove volume parameter
     5bb74c6 Added correct forms of derived properties to solid solution
     9166820 Added 1-mineral solidsolution test
     89647e0 Fixed bug in solid solution, unified mbr and ss property derivations
     aec027d 3 more tests for solid solutions
     7497705 Merge branch 'add_gibbs_energy'
     2a12ed4 remove missing mineral database