December 2014 Archives by thread
Starting: Mon Dec 1 10:50:37 PST 2014
Ending: Wed Dec 31 17:22:23 PST 2014
Messages: 964
- [cig-commits] [commit] devel: removed an accent from a file name; removed execution rights from text files (b1b4d47)
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- [cig-commits] [commit] master: Merge remote-tracking branch 'origin/devel' (25ef868)
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- [cig-commits] [commit] master's head updated: Merge remote-tracking branch 'origin/devel' (25ef868)
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- [cig-commits] [commit] devel: changed permissions of text files (3dc04fc)
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- [cig-commits] [commit] master: add a test for the iterated IMPES solver (86d8c86)
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- [cig-commits] [commit] master: Merge pull request #232 from jdannberg/iterated_IMPES_test (66c0a9b)
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- [cig-commits] [commit] devel: fixed the hdur issue for FORCESOLUTION (the code was correct but hdur was used instead of f0 and standing for f0, which led to confusion). Also fixed a small error detected by Vadim Monteiller in a print statement in the acoustic case. Note that in DATA/FORCESOLUTION one now needs to enter f0 instead of hdur, and have f0: at the beginning of that input line instead of hdur: (84259a2)
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- [cig-commits] [commit] devel: updated a comment about non-local file systems in all the Par_files (7e2053c)
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- [cig-commits] [commit] devel: implemented, cleaned or moved from constants.h the following options: SAVE_SEISMOGRAMS_DISPLACEMENT, SAVE_SEISMOGRAMS_VELOCITY, SAVE_SEISMOGRAMS_ACCELERATION, USE_BINARY_FOR_SEISMOGRAMS, SU_FORMAT, WRITE_SEISMOGRAMS_BY_MASTER; note that the format of DATA/Par_file has thus changed (4f8cdbc)
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- [cig-commits] [commit] devel: cleaned the Par_files (b9fb1aa)
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- [cig-commits] [commit] devel: cleaned the Par_files (8f50e27)
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- [cig-commits] [commit] devel: renamed wave.f90 to older_original_from_Jeroen_and_Dimitri_wave.f90 because Alexis Bottero is going to commit a new (improved) one (6ee0752)
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- [cig-commits] [commit] devel: Merge pull request #2 from komatits/devel (e399d27)
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- [cig-commits] [commit] devel: moved UTILS/thermocline to EXAMPLES/thermocline (d59f8a6)
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- [cig-commits] [commit] master: Correctly calculate memory usage (63db716)
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- [cig-commits] [commit] master: Remove unused defs/functions (a474d8f)
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- [cig-commits] [commit] master: Rename variables (d55416b)
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- [cig-commits] [commit] master: Moved many variables from Block class to Sim (48b16b5)
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- [cig-commits] [commit] master: Added stress recording to QuakeLib (7c2cb32)
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- [cig-commits] [commit] master: Add stress class get/set functions (2237c04)
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- [cig-commits] [commit] master: Added stress output to simulation (8fa518d)
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- [cig-commits] [commit] master: Add stress output parameters (ab26ad4)
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- [cig-commits] [commit] master: Add text based stress output (853acf3)
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- [cig-commits] [commit] master: HDF5 based stress output (0e3e0da)
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- [cig-commits] [commit] master: Fix blank/cleared classes (828fe71)
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- [cig-commits] [commit] master: Added stress output to simulation (6653564)
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- [cig-commits] [commit] master: Merge branch 'eheien-cff-output' (57fa194)
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- [cig-commits] [commit] master: Merge pull request #27 from eheien/master (c935dfd)
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- [cig-commits] [commit] baagaard/feature-output-station-names: Fixed memory leak. (d71b5a0)
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- [cig-commits] [commit] master: Merge branch 'baagaard/feature-output-station-names' (3e1d42e)
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- [cig-commits] [commit] master's head updated: Merge branch 'baagaard/feature-output-station-names' (3e1d42e)
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- [cig-commits] [commit] next: Merge branch 'baagaard/feature-output-station-names' into next (05dc929)
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- [cig-commits] [commit] next's head updated: Merge branch 'baagaard/feature-output-station-names' into next (05dc929)
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- [cig-commits] [commit] devel: Modif DSM directory (fc799ce)
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- [cig-commits] [commit] master: make the vtk output similar for coseismic and postseismic deformation. (7e45108)
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- [cig-commits] [commit] devel: added the 1D Python version developed by Alexis Bottero (1579d3c)
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- [cig-commits] [commit] devel: Merge pull request #3 from komatits/devel (3348030)
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- [cig-commits] [commit] devel: added Alexis Bottero's new Fortran version (2459604)
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- [cig-commits] [commit] devel: Merge pull request #4 from komatits/devel (2d7fb82)
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- [cig-commits] [commit] master: Merge remote-tracking branch 'origin/devel' (3b64f8f)
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- [cig-commits] [commit] master's head updated: Merge remote-tracking branch 'origin/devel' (3b64f8f)
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- [cig-commits] [commit] master: Bug fix (8b81068)
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- [cig-commits] [commit] master: Merge pull request #28 from eheien/master (3bf1fe6)
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- [cig-commits] [commit] master: Fix compatibility with gcc compiler (d1f87e1)
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- [cig-commits] [commit] master: Merge pull request #29 from eheien/master (4d339b3)
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- [cig-commits] [commit] devel: Added an example of the use of AXISYM option (6976bd1)
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- [cig-commits] [commit] devel: Changed "echo `date`" to "date" which is actually the same (44fffe7)
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- [cig-commits] [commit] devel: Merge pull request #156 from bottero/devel (08a72c3)
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- [cig-commits] [commit] devel: renamed EXAMPLES/ExampleAXISYM to EXAMPLES/axisymmetric_case_AXISYM_option (e708da9)
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- [cig-commits] [commit] devel: added Paul Cristini's Python script to generate a thermocline (3c39802)
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- [cig-commits] [commit] devel: Merge pull request #158 from komatits/devel (0a478c5)
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- [cig-commits] [commit] master: Handle change of output_interval during restart. (8b38e5e)
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- [cig-commits] [commit] master: Merge pull request #236 from gassmoeller/visualization_fix (8e658c7)
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- [cig-commits] [commit] devel: fixed a dependency problem in the Makefile (0236c76)
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- [cig-commits] [commit] devel: Merge pull request #5 from komatits/devel (5256719)
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- [cig-commits] [commit] master: Merge remote-tracking branch 'origin/devel' (f626de1)
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- [cig-commits] [commit] master's head updated: Merge remote-tracking branch 'origin/devel' (f626de1)
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- [cig-commits] [commit] devel: improved the Gnuplot script (81540ba)
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- [cig-commits] [commit] devel: Merge pull request #6 from komatits/devel (9ef3122)
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- [cig-commits] [commit] master: Merge remote-tracking branch 'origin/devel' (208817e)
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- [cig-commits] [commit] master's head updated: Merge remote-tracking branch 'origin/devel' (208817e)
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- [cig-commits] [commit] devel: fixed a typo (196d1ee)
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- [cig-commits] [commit] devel: Merge pull request #7 from komatits/devel (b1ad6ac)
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- [cig-commits] [commit] master: Merge remote-tracking branch 'origin/devel' (c55f4c1)
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- [cig-commits] [commit] master's head updated: Merge remote-tracking branch 'origin/devel' (c55f4c1)
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- [cig-commits] [commit] devel: added src/inverse_problem (for our work with Vadim Monteiller: as planned we are trying a way of parallelizing the Fortran inversion tools to see how fast they can be made) (509c631)
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- [cig-commits] [commit] devel: Copied comm splitters from cartesian. updates parameters (f957c11)
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- [cig-commits] [commit] devel: Adds constants for multiple runs (41b8778)
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- [cig-commits] [commit] devel: Changes default communicator from world to local (56a2795)
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- [cig-commits] [commit] devel: Reads locally and broadcasts database addressing (ab8f95e)
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- [cig-commits] [commit] devel: Reads locally and broadcasts OC databases (2bf98d4)
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- [cig-commits] [commit] devel: Reads locally and broadcasts database coupling (786a3bb)
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- [cig-commits] [commit] devel: Reads locally and broadcasts database MPI CM (e9f378c)
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- [cig-commits] [commit] devel: Reads locally and broadcasts database MPI OC (3b86bd7)
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- [cig-commits] [commit] devel: Reads locally and broadcasts CM databases (0052298)
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- [cig-commits] [commit] devel: Adds bcast_all_*_for_database (64b2f0d)
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- [cig-commits] [commit] devel: Reads locally and broadcasts IC databases (478353a)
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- [cig-commits] [commit] devel: Reads locally and broadcasts Stacey database (6407410)
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- [cig-commits] [commit] devel: Removes remaining hard-coded OUTPUT_FILES paths (d136c78)
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- [cig-commits] [commit] devel: Modifies STATIONS path for simultaneous runs (39137df)
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- [cig-commits] [commit] devel: Reads locally and broadcasts database MPI IC (4f3bbe7)
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- [cig-commits] [commit] devel: Modifies OUTPUT_FILES and CMTSOLUTION for simultaneous runs (df37363)
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- [cig-commits] [commit] devel: Fixes bcasting starting address for 'addressing' array (d8730de)
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- [cig-commits] [commit] devel: "Buildbot ran code beautifier." (897de40)
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- [cig-commits] [commit] devel: fixed a typo (e7a2c9d)
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- [cig-commits] [commit] devel: fixed a typo (812d43c)
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- [cig-commits] [commit] devel: Change default compiler for regional_Greece_small (ed49176)
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- [cig-commits] [commit] devel: Ignore constants_tomography.h file. (40c52f8)
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- [cig-commits] [commit] devel: Remove some unused variables. (49b5cd6)
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- [cig-commits] [commit] devel: Move variable from module to subroutine. (2cc93c3)
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- [cig-commits] [commit] master: add the slip distribution model of Konca et al. (2008) for the 2007 Mw 8.6 Bengkulu earthquake (ffbcb15)
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- [cig-commits] [commit] master: smooth the contours in grdmap.sh (2aef566)
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- [cig-commits] [commit] master: trivial change in obsres.py (b62c6e1)
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- [cig-commits] [commit] master: trivial change in konca+08_km.flt; add the same file in the Bengkulu07 folder. (167d30f)
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- [cig-commits] [commit] master: add konca+08_km.flt (234c38c)
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- [cig-commits] [commit] master: Merge branch 'master' of https://github.com/geodynamics/relax (9e8e2ba)
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- [cig-commits] [commit] master: convert the Nias slip model to m and fix the geometry of the Konca+08 Bengkulu model. (8146efe)
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- [cig-commits] [commit] master: add the slip distribution of Gusman et al. (2010) of the 2007 Mw 8.6 Bengkulu earthquake. (756e6d0)
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- [cig-commits] [commit] devel: adds tool addition_sem to src/tomography (9fd2f43)
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- [cig-commits] [commit] devel: updates smoothing, interpolation; makes difference_sem to work in parallel (41a35bb)
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- [cig-commits] [commit] devel: updates configure scripts to match also SPECFEM3D_Cartesian ones (db3335b)
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- [cig-commits] [commit] devel: fixes filename argument for routine write_kernel_netcdf() (6664099)
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- [cig-commits] [commit] devel: "Buildbot ran code beautifier." (00ae7db)
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- [cig-commits] [commit] devel: Move a file (b7ffc55)
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- [cig-commits] [commit] devel: Test (2a8653e)
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- [cig-commits] [commit] devel: Merge branch 'devel' of https://github.com/geodynamics/specfem3d into devel (59f86f1)
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- [cig-commits] [commit] devel: Change in big example for coupled code directory (c81e35f)
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- [cig-commits] [commit] devel: Merge branch 'devel' of https://github.com/geodynamics/specfem3d into devel (d427560)
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- [cig-commits] [commit] branch 'pull_39' created
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- [cig-commits] [commit] pull_39: Use scipy.constants for physical constants. (e11c770)
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- [cig-commits] [commit] pull_39: fix test output (d9ae13d)
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- [cig-commits] [commit] pull_39: tests: better float comparisons (d0894c8)
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- [cig-commits] [commit] pull_39: update tests to use new floating point check (ac2c35d)
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- [cig-commits] [commit] devel: suppressed the "configure" and "make" steps from all the run_this_example.sh (20c4747)
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- [cig-commits] [commit] devel: suppressed the "configure" and "make" steps from all the run_this_example.sh (fc2839b)
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- [cig-commits] [commit] devel: suppressed the "configure" and "make" steps from all the run_this_example.sh (d2a8da4)
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- [cig-commits] [commit] devel: added run_this_example.sh for EXAMPLES/small_benchmark_run_to_test_very_simple_Earth and EXAMPLES/small_benchmark_run_to_test_more_complex_Earth (0d505ae)
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- [cig-commits] [commit] devel: put the "make clean ; make all" step back in all the run_this_example.sh scripts because in the case of SPECFEM3D_GLOBE the solver is compiled with static array and loop sizes that depend on the mesh under study (b6ec874)
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- [cig-commits] [commit] baagaard/feature-output-station-names: Fix bug for outputting station names in parallel. (9f6ea7b)
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- [cig-commits] [commit] master: Merge branch 'baagaard/feature-output-station-names' (b363ef8)
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- [cig-commits] [commit] master's head updated: Merge branch 'baagaard/feature-output-station-names' (b363ef8)
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- [cig-commits] [commit] devel: updated some comments in four scripts (1c27735)
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- [cig-commits] [commit] master: test commit from cab (7a86b87)
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- [cig-commits] [commit] devel: Open IMAIN earlier in solver. (1aed3e6)
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- [cig-commits] [commit] devel: Refactor mesher's IMAIN initialization to match solver. (49b9f65)
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- [cig-commits] [commit] master: add the slip distribution of Han et al. (2014) for the 2010 Mw 7.9 Mentawai earthquake (42d1106)
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- [cig-commits] [commit] baagaard/feature-output-station-names: Added missing stations names to 3d/hex8 Green's fns points file. (48a0327)
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- [cig-commits] [commit] master: Merge branch 'baagaard/feature-output-station-names' (e33331f)
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- [cig-commits] [commit] master's head updated: Merge branch 'baagaard/feature-output-station-names' (e33331f)
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- [cig-commits] [commit] next: Merge branch 'baagaard/feature-output-station-names' into next (c123763)
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- [cig-commits] [commit] next's head updated: Merge branch 'baagaard/feature-output-station-names' into next (c123763)
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- [cig-commits] [commit] master: remove annoying output (4632238)
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- [cig-commits] [commit] master: use numdiff (7b0e5a7)
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- [cig-commits] [commit] master: Add a burnman.constants file to import the scipy constants (a1bfc7b)
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- [cig-commits] [commit] master: Merge pull request #39 from ian-r-rose/offload_constants (d4a0004)
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- [cig-commits] [commit] master's head updated: Merge pull request #39 from ian-r-rose/offload_constants (d4a0004)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add Modified Tait EoS and expression for G (94d8bac)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added TO_DO_LIST.txt (729c545)
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- [cig-commits] [commit] add_thermodynamic_potentials: Attempts to locate tc-burnman discrepancies (9f037a6)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added pv SolidSolution parameters (f47e82f)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added preliminary format for SolidSolution parameters (5d26be8)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added molar mass calculator and data table (9dcbc7b)
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- [cig-commits] [commit] add_thermodynamic_potentials: Abbreviate kd (ca277f4)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added comment to warn that Cp, V where Landau/Bragg-Williams order-disorder is implemented are currently incorrect (e10f600)
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- [cig-commits] [commit] add_thermodynamic_potentials: Implemented sample_pressure attribute for experimental data inversion (777fd1d)
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- [cig-commits] [commit] add_thermodynamic_potentials: Started work on Bragg-Williams order-disorder. (3bbd979)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added endmember Gibbs with Landau, and a new test script. (cdb8c44)
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- [cig-commits] [commit] add_thermodynamic_potentials: Minor edit (eb13f4d)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added minerals to HP_2011.py (a88fd04)
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- [cig-commits] [commit] add_thermodynamic_potentials: Continued work on Bragg-Williams order-disorder. (ec1fd6d)
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- [cig-commits] [commit] add_thermodynamic_potentials: Implemented HP2011 Landau and Bragg-Williams order-disorder models for endmembers (0241963)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added HP2011 ds62 and associated parser (d7ffcf3)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added Katsura_2009_wadsleyite (c28b11f)
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- [cig-commits] [commit] add_thermodynamic_potentials: Minor corrections (2dff620)
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- [cig-commits] [commit] add_thermodynamic_potentials: Adding non-functional solidsolution.py (5b03886)
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- [cig-commits] [commit] add_thermodynamic_potentials: Initial working copy (non-functional) adding solid solutions (7ba368b)
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- [cig-commits] [commit] add_thermodynamic_potentials: Minor change (a073d79)
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- [cig-commits] [commit] add_thermodynamic_potentials: Corrected HP2011 data parsing (1703b69)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added start of test script to process solid solution models (eac9b33)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added example plot to test_process_solidsolution.py (8a557c9)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add einstein thermal model (618ce37)
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- [cig-commits] [commit] add_thermodynamic_potentials: Moved HP2011 test to tests directory (efbf2b7)
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- [cig-commits] [commit] add_thermodynamic_potentials: Corrected HP2011 data parsing (ed81e69)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added non-ideal contribution to solidsolution test file (0540640)
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- [cig-commits] [commit] add_thermodynamic_potentials: Corrected HP2011 data parsing (d778449)
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- [cig-commits] [commit] add_thermodynamic_potentials: Use einstein.py to do the heat capacity stuff, implement a few of the not-yet-completed thermodynamic functions (30679c0)
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- [cig-commits] [commit] add_thermodynamic_potentials: Bugfixes (97cb077)
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- [cig-commits] [commit] add_thermodynamic_potentials: First alpha of SolidSolution base class (8c5e99f)
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- [cig-commits] [commit] add_thermodynamic_potentials: Calculate Gibbs and Helmholtz in the mineral class, but fail silently if they are not implemented/unable. (394dcc2)
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- [cig-commits] [commit] add_thermodynamic_potentials: Remove unnecessary inheritance (920e093)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add interface for thermodynamic potentials (69d3701)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added excess S, V to test_process_solidsolution.py (e264d07)
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- [cig-commits] [commit] add_thermodynamic_potentials: Minor change (e7001f9)
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- [cig-commits] [commit] add_thermodynamic_potentials: Corrected sign of S excess (7fbd0e4)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added print statements for module addition to HPdata parsing (3f65428)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add the ability to calculate Helmholtz and Gibbs free energies to SLB, and more generally to anything using the Debye model. (8880b18)
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- [cig-commits] [commit] add_thermodynamic_potentials: SolidSolution test now includes site occupancies and ideal activities (c6b4ada)
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- [cig-commits] [commit] add_thermodynamic_potentials: Remove already inherited methods (feb9540)
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- [cig-commits] [commit] add_thermodynamic_potentials: Comments added to test_process_solidsolution.py (899eb1e)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add pressure to the various EOSs that need it (aff4977)
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- [cig-commits] [commit] add_thermodynamic_potentials: Prepped new SLB2011 input file to take all the endmembers in SLB2011 (29f9f4b)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added solid solutions from hefesto to new SLB_2011 input file (ee33dd1)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added more attributes to the solidsolution class (a8e6042)
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- [cig-commits] [commit] add_thermodynamic_potentials: Moved molar_mass.py to misc/ (67bc3e7)
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- [cig-commits] [commit] add_thermodynamic_potentials: Initial version of SolutionModel class, including one that does nothing, and IdealSolution class, a SymmetricVanLaar class, and an AsymmetricVanLaar class. Still work to be done (f3b6439)
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- [cig-commits] [commit] add_thermodynamic_potentials: Bug fixes (178268b)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added check for endmember and solid solution member compositional equality (29bb7a5)
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- [cig-commits] [commit] add_thermodynamic_potentials: Temporary fix until ProcessSolidSolutionChemistry is fixed (d3bdf15)
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- [cig-commits] [commit] add_thermodynamic_potentials: Merged SLB_2011.py with solid-solution-bearing file (0fa8e10)
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- [cig-commits] [commit] add_thermodynamic_potentials: Implemented endmember configurational entropies for disordered phases (a4dc8be)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added Holland et al., 2013 lower mantle dataset (fd15837)
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- [cig-commits] [commit] add_thermodynamic_potentials: Adapted gibbs and chemical potential processing (39ef045)
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- [cig-commits] [commit] add_thermodynamic_potentials: Removed pressure as input variable to F(V, T) and volume as input variable to Gibbs(P, T) (23f5a51)
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- [cig-commits] [commit] add_thermodynamic_potentials: Tweaked axes in solidsolution benchmarks (a4109be)
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- [cig-commits] [commit] add_thermodynamic_potentials: Restored aliases to SLB_2011.py (dc69656)
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- [cig-commits] [commit] add_thermodynamic_potentials: Minor bug fix (36b750b)
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- [cig-commits] [commit] add_thermodynamic_potentials: Fixed Gibbs bug created last night (87d7702)
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- [cig-commits] [commit] add_thermodynamic_potentials: Bugfix for entropy term in ideal_gibbs_excess, added partial gibbs functions (833d921)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add test script. Not working (57e145b)
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- [cig-commits] [commit] add_thermodynamic_potentials: Allow multiple instances of same element in endmember formulae (757cd70)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added set_method to solid solution initialisation, added partial gibbs function (d1d528f)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added vacancies to atomic_masses.dat (c807951)
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- [cig-commits] [commit] master's head updated: Merge pull request #35 from tjhei/doc_updates (482343f)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added new VRH and HS bound benchmarks (8b9fb89)
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- [cig-commits] [commit] master's head updated: Merge remote-tracking branch 'origin/devel' (b01e61f)
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- [cig-commits] [commit] devel: updated two comments (ee73d7f)
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- [cig-commits] [commit] master: Fixed comment on Z (4fc6579)
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- [cig-commits] [commit] master: Added new VRH and HS bound benchmarks (630bdee)
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- [cig-commits] [commit] master: Added material model based on rheology in Morency and Doin, 2004 (2d0c744)
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- [cig-commits] [commit] devel: fixed the "STOP NUMBER_OF_SIMULTANEOUS_RUNS <= 0 makes no sense" bug and fixed a related minor issue in some run_this_example.sh scripts (caa1a92)
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- [cig-commits] [commit] add_thermodynamic_potentials: Add partial derivatives of gibbs to modified tait (H, S, Cp) (1636455)
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- [cig-commits] [commit] add_thermodynamic_potentials's head updated: Add partial derivatives of gibbs to modified tait (H, S, Cp) (1636455)
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- [cig-commits] [commit] master: fix package/module python weirdness (a94c81f)
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- [cig-commits] [commit] add_thermodynamic_potentials: Added H, S, V calculations to solidsolution.py (75e6b38)
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- [cig-commits] [commit] add_gibbs_energy: Adding non-functional solidsolution.py (a979bde)
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- [cig-commits] [commit] add_gibbs_energy: Abbreviate kd (4646fab)
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- [cig-commits] [commit] add_gibbs_energy: Added endmember Gibbs with Landau, and a new test script. (7b49197)
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- [cig-commits] [commit] add_gibbs_energy: Implemented sample_pressure attribute for experimental data inversion (6744559)
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- [cig-commits] [commit] add_gibbs_energy: Minor edit (9596d37)
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- [cig-commits] [commit] add_gibbs_energy: Implemented HP2011 Landau and Bragg-Williams order-disorder models for endmembers (0bd6fe5)
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- [cig-commits] [commit] add_gibbs_energy: Add Modified Tait EoS and expression for G (6246665)
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- [cig-commits] [commit] add_gibbs_energy: Continued work on Bragg-Williams order-disorder. (db3af2d)
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- [cig-commits] [commit] add_gibbs_energy: Added molar mass calculator and data table (d29f046)
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- [cig-commits] [commit] add_gibbs_energy: Attempts to locate tc-burnman discrepancies (9897b21)
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- [cig-commits] [commit] add_gibbs_energy: Started work on Bragg-Williams order-disorder. (d696c99)
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- [cig-commits] [commit] add_gibbs_energy: Added comment to warn that Cp, V where Landau/Bragg-Williams order-disorder is implemented are currently incorrect (d8e5330)
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- [cig-commits] [commit] add_gibbs_energy: Update name of gibbs function (91e92f9)
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- [cig-commits] [commit] add_gibbs_energy: Documented and changed name of sample_pressure (now eos_pressure) (8b38090)
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- [cig-commits] [commit] add_gibbs_energy: Rejigged SolidSolution class (8e7ba31)
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- [cig-commits] [commit] add_gibbs_energy: Initial version of SolutionModel class, including one that does nothing, and IdealSolution class, a SymmetricVanLaar class, and an AsymmetricVanLaar class. Still work to be done (4e685fe)
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- [cig-commits] [commit] add_gibbs_energy: Added more attributes to the solidsolution class (7431641)
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- [cig-commits] [commit] add_gibbs_energy: Add the ability to calculate Helmholtz and Gibbs free energies to SLB, and more generally to anything using the Debye model. (61143d0)
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- [cig-commits] [commit] add_gibbs_energy: Added configurational entropy to solidsolution.py (e8a41f5)
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- [cig-commits] [commit] add_gibbs_energy: Add pressure to the various EOSs that need it (494f1dd)
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- [cig-commits] [commit] add_gibbs_energy: Calculate Gibbs and Helmholtz in the mineral class, but fail silently if they are not implemented/unable. (0173631)
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- [cig-commits] [commit] add_gibbs_energy: Added check for endmember and solid solution member compositional equality (bde5c26)
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- [cig-commits] [commit] add_gibbs_energy: Rename to emphasize extensive quantity (7286308)
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- [cig-commits] [commit] add_gibbs_energy: Corrected sign of S excess (43d6979)
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- [cig-commits] [commit] add_gibbs_energy: Removed pressure as input variable to F(V, T) and volume as input variable to Gibbs(P, T) (b2549c6)
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- [cig-commits] [commit] master: Probably better not to assume values, just use nan in this case (76e08d1)
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- [cig-commits] [commit] master: Remove superfluous set_method (9b2bfdd)
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- [cig-commits] [commit] master: Augment warnings (867a349)
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- [cig-commits] [commit] master: This is now out of place, so remove it. This type of error checking should be done in validate_parameters() (d7cbf83)
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- [cig-commits] [commit] master: Merge pull request #57 from ian-r-rose/validate_parameters (5e9eb1c)
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- [cig-commits] [commit] master: fix test script on macos (210427b)
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- [cig-commits] [commit] master: Merge pull request #70 from tjhei/testing_macos (498861c)
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- [cig-commits] [commit] master: Added geotherm tests (eb88de0)
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- [cig-commits] [commit] master: Added warning for pressure in geotherm (b344b96)
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- [cig-commits] [commit] master: Added Negative Pressure warning (edde94e)
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- [cig-commits] [commit] master: Added warning and fixed broken line in previous commit (952f3b0)
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- [cig-commits] [commit] master: Added to test.py (acaf7e9)
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- [cig-commits] [commit] master: Fixed broken partitioning test (4e12807)
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- [cig-commits] [commit] master: Merge pull request #69 from lordkman/test_geotherm (1d2396e)
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- [cig-commits] [commit] branch 'validate_MT_params' created
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- [cig-commits] [commit] validate_MT_params: Parameter validation for modified tait (3c66047)
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- [cig-commits] [commit] branch 'inversion' created
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- [cig-commits] [commit] inversion: some sorts of inversion setup (fbb6b61)
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- [cig-commits] [commit] validate_MT_params: Parameter validation for CORK (357942f)
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- [cig-commits] [commit] master: Fixed example_geotherms (36053b4)
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- [cig-commits] [commit] master: Merge pull request #71 from lordkman/hi_timo (a4ab63e)
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- [cig-commits] [commit] branch 'HP_fluids' created
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- [cig-commits] [commit] HP_fluids: Added HP_2011_fluids (c93dba0)
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- [cig-commits] [commit] HP_fluids: Added initialisation for HP_fluids (9ab3cab)
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- [cig-commits] [commit] HP_fluids: Modified mineral initialisation (f08d6f0)
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- [cig-commits] [commit] HP_fluids: R to constants.gas_constant (4711725)
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- [cig-commits] [commit] master: fix test output (7cf5c44)
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- [cig-commits] [commit] master: Merge PR #72 (3909895)
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- [cig-commits] [commit] master's head updated: Merge PR #72 (3909895)
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- [cig-commits] [commit] master: Fix sphinx dox for eos (2de018f)
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- [cig-commits] [commit] master: Merge pull request #73 from ian-r-rose/update_sphinx_dox (80c2a29)
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- [cig-commits] [commit] validate_MT_params: Parameter validation for CORK (015bcd8)
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- [cig-commits] [commit] validate_MT_params: Parameter validation for modified tait (3865304)
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- [cig-commits] [commit] validate_MT_params: Rebased, tidied (564a6a9)
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- [cig-commits] [commit] validate_MT_params's head updated: Rebased, tidied (564a6a9)
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- [cig-commits] [commit] add_thermodynamic_potentials, inversion, master, validate_MT_params: Add the ability to specify a different reference temperature (31e0306)
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- [cig-commits] [commit] add_thermodynamic_potentials, inversion, master, validate_MT_params: Moved one line after doc string. (4aee28e)
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- [cig-commits] [commit] add_thermodynamic_potentials, inversion, master, validate_MT_params: change mgd to include new reference temperatuer option. (4d13866)
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- [cig-commits] [commit] add_thermodynamic_potentials, inversion, master, validate_MT_params: Merge pull request #33 from ian-r-rose/different_reference_temperature (34700b5)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Adding non-functional solidsolution.py (a979bde)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Abbreviate kd (4646fab)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Implemented sample_pressure attribute for experimental data inversion (6744559)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Started work on Bragg-Williams order-disorder. (d696c99)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add Modified Tait EoS and expression for G (6246665)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added molar mass calculator and data table (d29f046)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added comment to warn that Cp, V where Landau/Bragg-Williams order-disorder is implemented are currently incorrect (d8e5330)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Minor edit (9596d37)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Continued work on Bragg-Williams order-disorder. (db3af2d)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Attempts to locate tc-burnman discrepancies (9897b21)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added endmember Gibbs with Landau, and a new test script. (7b49197)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Implemented HP2011 Landau and Bragg-Williams order-disorder models for endmembers (0bd6fe5)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Remove unnecessary inheritance (3a7cc54)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add interface for thermodynamic potentials (5aeee09)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Update name of gibbs function (91e92f9)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add einstein thermal model (dcb438c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bugfixes (379dc42)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Use einstein.py to do the heat capacity stuff, implement a few of the not-yet-completed thermodynamic functions (d136ccc)
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- [cig-commits] [commit] inversion, master, validate_MT_params: First alpha of SolidSolution base class (3fd4238)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Changed comment blob for burnman.SolidSolution (5a825ac)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Initial version of SolutionModel class, including one that does nothing, and IdealSolution class, a SymmetricVanLaar class, and an AsymmetricVanLaar class. Still work to be done (4e685fe)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Calculate Gibbs and Helmholtz in the mineral class, but fail silently if they are not implemented/unable. (0173631)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Rename to emphasize extensive quantity (7286308)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add pressure to the various EOSs that need it (494f1dd)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Remove already inherited methods (891c5f0)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Rejigged SolidSolution class (8e7ba31)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added more attributes to the solidsolution class (7431641)
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- [cig-commits] [commit] master: make branch (6b2e1b2)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add the ability to calculate Helmholtz and Gibbs free energies to SLB, and more generally to anything using the Debye model. (61143d0)
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- [cig-commits] [commit] master: add minerals (35b1865)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added configurational entropy to solidsolution.py (e8a41f5)
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- [cig-commits] [commit] master: Various fixes to manual text. (881d23d)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added check for endmember and solid solution member compositional equality (bde5c26)
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- [cig-commits] [commit] master: Merge pull request #53 from lordkman/Cay_man (409647f)
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- [cig-commits] [commit] master: Merge pull request #74 from sannecottaar/fix_other_database (7d494f8)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add missing file (3414b8a)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Corrected sign of S excess (43d6979)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Documented and changed name of sample_pressure (now eos_pressure) (8b38090)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bug fix for formula parsing (a7672d4)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bugfix (751c366)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Fix typos (53e469c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Minor bug fix (1ddc4c0)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Commented functions in processchemistry.py (7adde8f)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Temporary fix until ProcessSolidSolutionChemistry is fixed (54bfdc7)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Move out of burnman directory (dbfaa63)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Rename classes (e0dc4ab)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Start trying to do configurational entropy benchmark (db12d11)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Patch up so that the new stuff works as a package (e385354)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bug fixes (a743951)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Split configurational entropy from ideal gibbs (26bdb24)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added compositional array construction (c2a30cf)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Use np.power (ed83851)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Reproduce two of the curves from fig 3b (a0acae0)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add the enthalpy of solution benchmark (ccc4f06)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Finished ideal activity formulation (7929428)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Implemented endmember configurational entropies for disordered phases (aec2338)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Another bug fix for processchemistry.py (e47cb7b)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Emphasised the physical meaning of the normalisation constant in activity calculations (43ef3b9)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Variable change to ease comparison with diagram (f4cc5f2)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Overlay screengrabs (bee7cac)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Changed zero equality for endmember occupancy to tolerance (2228a98)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added comment for origin of formula in benchmark (c9e4070)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bugfix (b2d755e)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add another configurational entropy example (b18f1ef)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Remove unnecessary ones. (4505983)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Tweaked axes in solidsolution benchmarks (7cabc48)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Widened compositional bounds on spinel entropy benchmark (c70b6cd)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Simplified configurational entropy calculation (ce35392)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Removed pressure as input variable to F(V, T) and volume as input variable to Gibbs(P, T) (b2549c6)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Moved HP2011 test to tests directory (39b3e83)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Fixed Gibbs bug created last night (84fbe9b)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added P, T attributes and calcgibbs to solid solution class (cdc75d9)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Use burnman.constants (a5f1619)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added temporary test for previously buggy gibbs excesses (4ac0c70)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added set_method to solid solution initialisation, added partial gibbs function (00b57f4)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bugfix for entropy term in ideal_gibbs_excess, added partial gibbs functions (9125d96)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Allow multiple instances of same element in endmember formulae (c376611)
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- [cig-commits] [commit] inversion, master, validate_MT_params: add self (a1dfe00)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Unify how R is imported (a8c6a1a)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Farmed out endmember disorder functions, added preliminary solution properties (9c2a78f)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added H, S, V calculations to solidsolution.py (60c42ef)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add benchmark, and make bugfix associated with doing benchmark (1529078)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Updated process chemistry to accept fractions (e43ade1)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add partial derivatives of gibbs to modified tait (H, S, Cp) (2041882)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Bug fix (214f301)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added vacancies to atomic_masses.dat (b5e9ebb)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Disorganized work on getting dGdN stuff working (eb34fce)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix constants (aa99411)
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- [cig-commits] [commit] inversion, master, validate_MT_params: add entropy to EOS, remove volume parameter (2148b32)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added correct forms of derived properties to solid solution (5bb74c6)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added 1-mineral solidsolution test (9166820)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Fixed bug in solid solution, unified mbr and ss property derivations (89647e0)
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- [cig-commits] [commit] inversion, master, validate_MT_params: 3 more tests for solid solutions (aec027d)
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- [cig-commits] [commit] inversion, master, validate_MT_params: added test_eos (ffbe833)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Changed name (4fb6e49)
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- [cig-commits] [commit] inversion, master, validate_MT_params: change matplotlib backend to noop to make tests more robust (8ba8032)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Removed TODO (0785092)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Fixed tabbing (6459255)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Create new endmember and solid solution databases (64485e8)
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- [cig-commits] [commit] inversion, master, validate_MT_params: spaces to tabs (08034fe)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Tabs to spaces (da3191a)
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- [cig-commits] [commit] inversion, master, validate_MT_params: tests: modify sed parameters to work on macos (11ce3d8)
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- [cig-commits] [commit] inversion, master, validate_MT_params: remove to examples from test.sh (cd6897c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: whitespace fixes (b972a70)
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- [cig-commits] [commit] inversion, master, validate_MT_params: remove tabs (b98aaf2)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix test (eb0f2be)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge PR #63 manually (a1ab1c5)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #64 from bobmyhill/update_databases (f778518)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge branch 'add_gibbs_energy' (7497705)
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- [cig-commits] [commit] inversion, master, validate_MT_params: remove missing mineral database (2a12ed4)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #62 from tjhei/test_fixes (53964ef)
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- [cig-commits] [commit] inversion, master, validate_MT_params: move EOS into sub-package, rework imports, cleanup, documentation (4d4cd9f)
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- [cig-commits] [commit] inversion, master, validate_MT_params: style fixes (93d70b6)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix table.py (fcb1fd2)
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- [cig-commits] [commit] inversion, master, validate_MT_params: add to documentation (c635b06)
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- [cig-commits] [commit] inversion, master, validate_MT_params: style fixes (4e7538e)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix endmember computation (b9d3960)
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- [cig-commits] [commit] inversion, master, validate_MT_params: include fixes (3cd8aed)
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- [cig-commits] [commit] inversion, master, validate_MT_params: re-add old ferropericlase (9cbd2a2)
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- [cig-commits] [commit] inversion, master, validate_MT_params: remove quartz (457a26b)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix tests (6c162b2)
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- [cig-commits] [commit] master: Merge pull request #75 from geodynamics/validate_MT_params (32dadcc)
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- [cig-commits] [commit] inversion, master, validate_MT_params: add missing files (70ff3b3)
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- [cig-commits] [commit] master's head updated: Merge pull request #75 from geodynamics/validate_MT_params (32dadcc)
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- [cig-commits] [commit] inversion, master, validate_MT_params: remove tabs (a4434bb)
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- [cig-commits] [commit] inversion, master, validate_MT_params: nicer test output (47f6e09)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #66 from tjhei/style_fixes (6f75d37)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added Test_debye (b405b14)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added test for small numbers (f000648)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added test into tests.py (b72f42d)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix assertFloatEqual and run all tests (dd0fb1c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge PR #65 (e7f78ff)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Use eps instead of zero for temperature check (1b2984b)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add volume to EOS arguments in entropy and enthalpy for the moment (7257c2d)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add getters for enthalpy and entropy (88ccc04)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add benchmarks for entropy and enthalpy (6e9a3f4)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Remove __name__==__main block (8057e7c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add entropy to debye (0e43ce6)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #67 from ian-r-rose/quasiharmonic_additions (6111717)
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- [cig-commits] [commit] inversion, master, validate_MT_params: check for tabs in py files (84d51b3)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix whitespace (5c85fcd)
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- [cig-commits] [commit] inversion, master, validate_MT_params: restructure benchmarks (687fce2)
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- [cig-commits] [commit] inversion, master, validate_MT_params: update test script (2f6ee89)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added warning for pressure in geotherm (b344b96)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added geotherm tests (eb88de0)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added Negative Pressure warning (edde94e)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added warning and fixed broken line in previous commit (952f3b0)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Added to test.py (acaf7e9)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Fixed broken partitioning test (4e12807)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #68 from tjhei/test_improvements (916ee6a)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Fix tests (5ab517f)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Add parameter validation to equations of state (1a2a382)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Remove superfluous set_method (9b2bfdd)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Probably better not to assume values, just use nan in this case (76e08d1)
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- [cig-commits] [commit] inversion, master, validate_MT_params: This is now out of place, so remove it. This type of error checking should be done in validate_parameters() (d7cbf83)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Augment warnings (867a349)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #57 from ian-r-rose/validate_parameters (5e9eb1c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: fix test script on macos (210427b)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #70 from tjhei/testing_macos (498861c)
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- [cig-commits] [commit] inversion, master, validate_MT_params: Merge pull request #69 from lordkman/test_geotherm (1d2396e)
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- [cig-commits] [commit] master, validate_MT_params: Fixed example_geotherms (36053b4)
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- [cig-commits] [commit] master, validate_MT_params: Merge pull request #71 from lordkman/hi_timo (a4ab63e)
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- [cig-commits] [commit] master, validate_MT_params: Added HP_2011_fluids (c93dba0)
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- [cig-commits] [commit] master, validate_MT_params: Added initialisation for HP_fluids (9ab3cab)
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- [cig-commits] [commit] master, validate_MT_params: Modified mineral initialisation (f08d6f0)
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- [cig-commits] [commit] master, validate_MT_params: R to constants.gas_constant (4711725)
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- [cig-commits] [commit] master, validate_MT_params: fix test output (7cf5c44)
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- [cig-commits] [commit] master, validate_MT_params: Fix sphinx dox for eos (2de018f)
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- [cig-commits] [commit] master, validate_MT_params: Merge PR #72 (3909895)
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- [cig-commits] [commit] master, validate_MT_params: Merge pull request #73 from ian-r-rose/update_sphinx_dox (80c2a29)
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- [cig-commits] [commit] inversion,master: make branch (6b2e1b2)
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- [cig-commits] [commit] inversion,master: add minerals (35b1865)
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- [cig-commits] [commit] inversion, master: Merge pull request #74 from sannecottaar/fix_other_database (7d494f8)
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- [cig-commits] [commit] inversion, master: Merge pull request #75 from geodynamics/validate_MT_params (32dadcc)
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- [cig-commits] [commit] inversion: Merge remote-tracking branch 'upstream/master' into inversion (dbe5744)
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- [cig-commits] [commit] inversion's head updated: Merge remote-tracking branch 'upstream/master' into inversion (dbe5744)
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- [cig-commits] [commit] master: remove pdf (52d54f8)
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- [cig-commits] [commit] master: fix tab issure (2c03623)
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- [cig-commits] [commit] master: Merge pull request #76 from tjhei/cleaning_spree (9912a1d)
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- [cig-commits] [commit] master: Fixed solidsolution_benchmarks (105baa6)
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- [cig-commits] [commit] master: fix tests (be99e5d)
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- [cig-commits] [commit] master: Merge PR #77 (b798982)
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- [cig-commits] [commit] master: Get the order of these right... (aa5f041)
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- [cig-commits] [commit] master: Merge pull request #78 from ian-r-rose/bugfix (8e77491)
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- [cig-commits] [commit] branch 'small_fixes' created
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- [cig-commits] [commit] small_fixes: typo (bf0a970)
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- [cig-commits] [commit] small_fixes: order in error (f410b39)
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- [cig-commits] [commit] small_fixes: typos (3fdcb61)
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- [cig-commits] [commit] small_fixes: Merge branch 'master' of https://github.com/geodynamics/burnman (e1a05f1)
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- [cig-commits] [commit] master: Merge pull request #79 from geodynamics/small_fixes (86037d4)
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- [cig-commits] [commit] master's head updated: Merge pull request #79 from geodynamics/small_fixes (86037d4)
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- [cig-commits] [commit] master: Fix example seismic so that the depth list works (06e9d6d)
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- [cig-commits] [commit] master: Merge pull request #82 from ian-r-rose/fix_example_seismic (01d4aa0)
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- [cig-commits] [commit] master: Add order-disorder solid solution test, fixed 0K solid solution behaviour (8e75822)
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- [cig-commits] [commit] master: Merge pull request #81 from bobmyhill/add_solidsolution_test (881b878)
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- [cig-commits] [commit] branch 'jit_optimizations' created
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- [cig-commits] [commit] jit_optimizations: first stab at performance optimizations (841a4b7)
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- [cig-commits] [commit] inversion: rework inversion (28223d3)
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- [cig-commits] [commit] inversion: simplify code (fd84e96)
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- [cig-commits] [commit] inversion: larger profile runs (9cf2378)
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- [cig-commits] [commit] master: molar_fraction to molar_fractions (for consistency) (2990e1f)
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- [cig-commits] [commit] master: Added site fraction test (1c6cf41)
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- [cig-commits] [commit] master: Merge pull request #84 from bobmyhill/test_site_occupancies (7c010ac)
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- [cig-commits] [commit] inversion: Merge branch 'jit_optimizations' into inversion (601f721)
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- [cig-commits] [commit] inversion: update inversion file, add script (1098a3b)
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- [cig-commits] [commit] inversion's head updated: update inversion file, add script (1098a3b)
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- [cig-commits] [commit] master: Corrected enthalpy derivation in SLB (ff29c6a)
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- [cig-commits] [commit] master: Added PerpleX comparison benchmarks for SLB and MT (27c7a98)
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- [cig-commits] [commit] master: Corrected test again (f01fd18)
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- [cig-commits] [commit] master: add test output (fc189f3)
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- [cig-commits] [commit] master: Merge PR #85: Add gibbs benchmarks (fb1efda)
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- [cig-commits] [commit] devel: fixed some typos (13b20e5)
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- [cig-commits] [commit] devel: Merge pull request #10 from komatits/devel (2a1e1e1)
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- [cig-commits] [commit] master: Merge pull request #11 from geodynamics/devel (eb5c773)
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- [cig-commits] [commit] master's head updated: Merge pull request #11 from geodynamics/devel (eb5c773)
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- [cig-commits] [commit] devel: Merge pull request #12 from geodynamics/master (72dba5d)
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- [cig-commits] [commit] devel's head updated: Merge pull request #12 from geodynamics/master (72dba5d)
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- [cig-commits] [commit] master: Merge pull request #13 from geodynamics/devel (0474318)
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- [cig-commits] [commit] master's head updated: Merge pull request #13 from geodynamics/devel (0474318)
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- [cig-commits] [commit] devel: Check for err.h and work around for AIX (5b2b039)
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- [cig-commits] [commit] inversion: further cleaning (eb459ac)
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- [cig-commits] [commit] inversion: rename file (635dc1a)
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- [cig-commits] [commit] inversion: Added adiabat inversion (f1cec07)
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- [cig-commits] [commit] inversion: Fixed some broken things (32067ae)
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- [cig-commits] [commit] master: Correct validate parameter exception message (52fc298)
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- [cig-commits] [commit] master: Added warnings to CORK EoS (207b4ca)
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- [cig-commits] [commit] master: Added warnings to CORK EoS (5a718ba)
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- [cig-commits] [commit] master: Changed validate param limits for cork_P (da9ad27)
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- [cig-commits] [commit] master: Added chemical potentials functions (c8d4960)
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- [cig-commits] [commit] master: Added chemical potential benchmark (be0733a)
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- [cig-commits] [commit] master: added underscores to multiword functions (3a4dc2f)
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- [cig-commits] [commit] master: Changed validate param bounds to allow large minerals (like atg) (c240b94)
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- [cig-commits] [commit] master: Removed print statements (40445a9)
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- [cig-commits] [commit] master: fix tests (602461c)
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- [cig-commits] [commit] master: Merge PR #85 'Add chemical potentials' (a2a7ea5)
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- [cig-commits] [commit] master: Updated table.py (6ae0407)
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- [cig-commits] [commit] master: update test output (a773c76)
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- [cig-commits] [commit] master: Merge PR #88 'Updated table.py' (662f3b4)
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- [cig-commits] [commit] inversion: Renamed file. (776551f)
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- [cig-commits] [commit] inversion: Added a consistency inversion. Given an frac_pv and Fe fractions for each, see if you get the same answer out. (fcc314f)
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- [cig-commits] [commit] inversion: Added Enstatite-Pyrolite Mixing model (e9242b5)
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- [cig-commits] [commit] jit_optimizations: eos restructuring for performance reasons (ed9edf1)
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- [cig-commits] [commit] master: Distutils/setuptools have a bug which has problems globbing for support files. Flattening the directory structure fixes this. (5160ce8)
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- [cig-commits] [commit] master: Add new eos module to package (1d35ea5)
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- [cig-commits] [commit] master: Merge pull request #89 from ian-r-rose/fix_distutils (a847406)
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- [cig-commits] [commit] inversion: Added enstpyro inversion. (7bc430a)
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- [cig-commits] [commit] devel: added list_for_Zhinan_for_SPECFEM2D_PMLs.txt (items that need to be done for PMLs; we will remove that file when we are done) (18dca12)
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- [cig-commits] [commit] devel: added list_for_Zhinan_for_SPECFEM3D_PMLs.txt (items that need to be done for PMLs; we will remove that file when we are done) (3d45dde)
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- [cig-commits] [commit] devel: updated list_for_Zhinan_for_SPECFEM3D_PMLs.txt (b7d84b2)
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- [cig-commits] [commit] master: Changed the box geometry to allow you to specify an origin. (2ce551b)
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- [cig-commits] [commit] master: Addressed issues and added to changelog (cf064c4)
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- [cig-commits] [commit] master: Fixed initial conditions for box with origin (ff44215)
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- [cig-commits] [commit] master: Added test (7b5ce1a)
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- [cig-commits] [commit] master: Merge PR #235 'Changed the box geometry to allow you to specify an origin' (1a6b773)
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- [cig-commits] [commit] master: add tests (d9daef5)
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- [cig-commits] [commit] master: fix mineral helpers (5db8296)
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- [cig-commits] [commit] master: Merge pull request #92 from tjhei/add_helper_tests (4d93dd5)
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- [cig-commits] [commit] devel: adds flexwin/ as a submodule to directory ADJOINT_TOMOGRAPHY_TOOLS/ (ac3e87b)
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- [cig-commits] [commit] devel: adds safety check to avoid mesh coloring when using PMLs (5cd4f87)
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- [cig-commits] [commit] master: fix visualization output interval (4c5e243)
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- [cig-commits] [commit] master: Merge pull request #239 from tjhei/fix_vis_output_interval (fef0a8c)
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- [cig-commits] [commit] devel: added a stop statement if poroelastic materials are used for adjoint runs because Christina Morency mentioned that her routines for poroelastic materials are fully OK for forward runs but not debugged yet for adjoint runs (5482435)
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- [cig-commits] [commit] devel: updates pml routines; adds pml array permutations to be usable with mesh coloring (9d81034)
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- [cig-commits] [commit] devel: updates make rules in directory src/inverse_problem/ to avoid overlaps for make clean (1e5b445)
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- [cig-commits] [commit] devel: small code beautify (75e98c5)
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- [cig-commits] [commit] devel: uses local arrays for PML_dpotential_dxl, .. for slightly faster acoustic PML computations (8409ff4)
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- [cig-commits] [commit] devel: updates deville routines to work with NGLLX == 5, 6 or 7 (2c2e45f)
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- [cig-commits] [commit] devel: added doc/definition_of_unit_testing_and_regression_testing.txt (584a39e)
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- [cig-commits] [commit] devel: added doc/definition_of_unit_testing_and_regression_testing.txt (3ad4ad0)
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- [cig-commits] [commit] devel: added doc/definition_of_unit_testing_and_regression_testing.txt (ed7588a)
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- [cig-commits] [commit] devel: updates scripts in tests/ directory and adds test-subdirectory for testing tomography/ routines (f0f8e99)
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- [cig-commits] [commit] devel: adds test subdirectory tests/tomography/ (7ec9263)
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- [cig-commits] [commit] devel: Merge pull request #339 from danielpeter/devel (c92aeae)
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- [cig-commits] [commit] devel: changes output format of seismogram names to **network**.**station**.., also for adjoint source filenames (78316b2)
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- [cig-commits] [commit] devel: updates grep statements (48bb5b8)
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- [cig-commits] [commit] devel: renames reference solutions to new seismogram file format **network**.**station**... (9655bf6)
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- [cig-commits] [commit] devel: renames adjoint seismogram names (displacement and strain) to format /NT.S000001.** instead of /S000001.NT.** (87f62f6)
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- [cig-commits] [commit] devel: updates manual (c3b9c7e)
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- [cig-commits] [commit] devel: updates seis_process scripts (9ac3b62)
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- [cig-commits] [commit] devel: updates create_mesh.py for homogeneous halfspace example; adds argument check in ascii2sac.csh (0ed834c)
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- [cig-commits] [commit] devel: updates SPECFEM3D version number to version 3.0 (9d3bd75)
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- [cig-commits] [commit] devel: adds pythonic indents to create_mesh.py (2c88025)
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- [cig-commits] [commit] master: make benchmark output more robust (368ed9c)
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- [cig-commits] [commit] master: silent unittests (4116d07)
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- [cig-commits] [commit] master: make tester a bit more lenient with tolerances (88d522d)
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- [cig-commits] [commit] master: test script should not return non-zero exit code (611231c)
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- [cig-commits] [commit] master: Merge pull request #94 from tjhei/fix_tests (62ae595)
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- [cig-commits] [commit] master: deltat is needed earlier (c7f8675)
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- [cig-commits] [commit] master: Add set_method to solid solution (a0ff0f1)
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- [cig-commits] [commit] master: Merge pull request #96 from ian-r-rose/add_set_method_to_solidsolution (b732698)
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- [cig-commits] [commit] master: Updated todo.txt (4959d3f)
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- [cig-commits] [commit] master: Merge pull request #97 from bobmyhill/todo_update (79ecc7f)
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- [cig-commits] [commit] branch 'doc_updates' created
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- [cig-commits] [commit] doc_updates: Changes to doocumentation to incorporate new thermodynamics stuff. (4e11d05)
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- [cig-commits] [commit] doc_updates: Updated cover page (657fe72)
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- [cig-commits] [commit] doc_updates: Updated introductory passages in __init__.py (da2c992)
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- [cig-commits] [commit] doc_updates: Tweaked introductory passages in __init__.py (9b7ce0f)
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- [cig-commits] [commit] doc_updates: Split background.rst into more manageable pieces (7afc024)
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- [cig-commits] [commit] doc_updates: Updated manual references (89ea3fa)
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- [cig-commits] [commit] doc_updates: Partial update to thermoelastics part of background (57aecff)
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- [cig-commits] [commit] doc_updates: Added solid solution background to manual (726196f)
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- [cig-commits] [commit] doc_updates: Added stub for gibbs minimization to manual (d0fbf8e)
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- [cig-commits] [commit] doc_updates: Added stub for thermodynamics background to manual (1bddbf9)
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- [cig-commits] [commit] doc_updates: Split user inputs in background (3899cc0)
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- [cig-commits] [commit] doc_updates: Clarified use of Einstein model in HP2011 (deb742c)
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- [cig-commits] [commit] doc_updates: Added user inputs back to background (d7b8c31)
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- [cig-commits] [commit] doc_updates: Fix some warnings (6a88202)
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- [cig-commits] [commit] master: Add G to comparison arrays. Not a great test, as this is zero for MTait, but at least checks it is set... (ca4a16a)
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- [cig-commits] [commit] master: Add arithmetic and harmonic averages for G in solidsolution (thanks to Mark Panning for pointing out they were missing) (603e41c)
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- [cig-commits] [commit] master: Use harmonic mean for now (2c49c97)
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- [cig-commits] [commit] master: Check for zero shear modulus (8afad1d)
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- [cig-commits] [commit] master: Merge pull request #93 from ian-r-rose/add_shear_to_solidsolution (911aa89)
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- [cig-commits] [commit] doc_updates: Fix typo (b409e71)
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- [cig-commits] [commit] doc_updates: Draft of thermoelastics background completed (da7b46c)
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- [cig-commits] [commit] doc_updates: Draft of thermodynamics background completed (c2bb5f2)
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- [cig-commits] [commit] doc_updates: Draft of solid solution background completed (eb0f736)
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- [cig-commits] [commit] doc_updates: Added solid solution autoclasses to materials.rst (0f29d91)
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- [cig-commits] [commit] doc_updates: Function name changed to lowercase (d8c79b2)
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- [cig-commits] [commit] doc_updates: Added thermodynamics.rst (cf7932b)
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- [cig-commits] [commit] doc_updates: Fix warning (fb0a218)
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- [cig-commits] [commit] doc_updates: Slight reorganization (8643314)
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- [cig-commits] [commit] doc_updates: Remove redundant diagram (a41c029)
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- [cig-commits] [commit] doc_updates: Add note about the difference between MGD and SLB (19b854c)
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- [cig-commits] [commit] doc_updates: Correct docstring (6c3867e)
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- [cig-commits] [commit] doc_updates: Update text (a6933cb)
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- [cig-commits] [commit] devel: fix the current way for excluding corners to make sure there is no contradiction on the normal when Stacey ABC is used, which did not work, since for different IEDGE array "codeabs(IEDGE, ispecabs)" is independent of each other. (29a21a0)
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- [cig-commits] [commit] devel: "Buildbot ran code beautifier." (b259d54)
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- [cig-commits] [commit] devel: Merge branch 'devel' of github.com:xiezhinan/specfem2d into devel (831af35)
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- [cig-commits] [commit] devel: fix the problem that PMLs do not support the fluid-solid boundary inside CPML_Z_ONLY (aecbecc)
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- [cig-commits] [commit] devel: Merge branch 'devel' of github.com:xiezhinan/specfem2d into devel (b20fc38)
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- [cig-commits] [commit] devel: "Buildbot ran code beautifier." (a7ad0d4)
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- [cig-commits] [commit] doc_updates: Corrected E_th term (72599eb)
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- [cig-commits] [commit] doc_updates: Corrected P_th term and blurb in HP2011 (bc8634d)
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- [cig-commits] [commit] doc_updates: Corrected citation for CORK, added MT EoS (w/o thermal corrections) to list of EoSs (3e040ab)
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- [cig-commits] [commit] branch 'split_mt' created
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- [cig-commits] [commit] split_mt: Alpha of MT split into isothermal and thermal (58450e1)
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- [cig-commits] [commit] doc_updates: Add stuff to thermodynamics page (c35e638)
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- [cig-commits] [commit] branch 'update_examples' created
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- [cig-commits] [commit] update_examples: Updated chemical potentials (a0c9971)
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- [cig-commits] [commit] update_examples: Updated chemical potential benchmarks (c7f47cd)
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- [cig-commits] [commit] update_examples: Updated __init__.py (c8fa38b)
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- [cig-commits] [commit] update_examples: Bugfix allowing for creation of ideal solutions (5cf9ec9)
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- [cig-commits] [commit] update_examples: Created chemical potentials example document (d82e75d)
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- [cig-commits] [commit] update_examples: Created solid solution example document (b0fa391)
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- [cig-commits] [commit] update_examples: Added output figures from examples for manual (d171a45)
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- [cig-commits] [commit] update_examples: Updated examples.rst for manual (08a5688)
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- [cig-commits] [commit] split_mt: Reverted change to K' validation for MT (b0844bf)
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- [cig-commits] [commit] update_examples: Tweak fO2 figure for manual (beeb267)
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- [cig-commits] [commit] update_examples: Neatened description of example_solid_solution (bf39df3)
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- [cig-commits] [commit] master: SolidSolution asked for excess_enthalpy and excess_entropy, which are not always defined. Make dummy functions in the base class that returns zero. (c1259b3)
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- [cig-commits] [commit] master: Merge pull request #101 from ian-r-rose/augment_solutionmodel_base (b1584d2)
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- [cig-commits] [commit] update_examples: Reverted changes to solidsolution.py (315226f)
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- [cig-commits] [commit] master: Merge pull request #100 from geodynamics/update_examples (3f851f0)
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- [cig-commits] [commit] master's head updated: Merge pull request #100 from geodynamics/update_examples (3f851f0)
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- [cig-commits] [commit] split_mt: Add dummy function for C_p to MT (975b8a5)
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- [cig-commits] [commit] split_mt: Tweak blurb and add equation of state redefinition in mineral.py (478aeeb)
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- [cig-commits] [commit] split_mt: Add MT to benchmarks (ed9a385)
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