[cig-commits] [commit] next's head updated: Merge branch 'knepley/upgrade-petsc-3.5' into next (904047b)
cig_noreply at geodynamics.org
cig_noreply at geodynamics.org
Wed Nov 5 15:48:23 PST 2014
Repository : https://github.com/geodynamics/pylith
Branch 'next' now includes:
3a5fe8e Add notes on how to delete tags.
ce8f559 Trivial change (formatting).
3b65771 Temporary fix for change in PETSc interface.
7cd133d Merge branch 'knepley/fix-faults-parallel'
180ad76 Turn off journal output.
8174f90 MeshBuilder: spaceDim must be consistent across processes
330be43 Merge branch 'knepley/fix-faults-parallel'
528d0bf Updated documentation (including README and release notes) about buried fault edges.
bc4ad8c Fixed typo in manual.
8727dd2 Merge branch 'knepley/fix-faults-parallel'
11bb03b Small fixes for clamped edges in cohesive cells for FaultCohesiveDyn. Added full-scale test.
1507a08 Remove obsolete example (Green's function kludge).
104ef11 Add fault edges to examples/2d/greensfns.
f75361d Update comments in pylithapp.cfg.
a6dcee9 Fixes for clamped edges.
5bd6e3a Added missing PYLITH_CHECK_ERROR(err).
e786a4d Fix error trapping for PETSc functions.
a2e43ea Fault: Fix definition of fault Section - Must constrain clamped vertices - We get the vertices from the label, translate to fault numbering, and constrain all dofs
45b56d3 Fix some small bugs in settings constraints in fault section.
eeb2381 Merge remote-tracking branch 'origin/master' into knepley/fix-faults-parallel
0f8af6e Fault: We need a consistent closure for clamped cohesive cells - We get the two end faces of the prism and concatenate their closure
42a165c Fix for settings constraints for fault fields in parallel.
cdddc30 Finish full-scale test for spontaneous rupture with embedded fault.
ccda651 Add TestShearDispFriction to test suite.
00372ba More fixes to fault field constraints.
e379fb0 Update full-scale test to use split fields and custom fault preconditioner.
281bcd4 Fixed filtering of vertices/edges in setting constraints for fault fields.
945767f Added use of split fields for 2-D embedded fault test case.
60157a0 Create nodeset for fault edge in 2-D subduction example.
d8a8e61 Fix typo in parameter file.
59aa4ff Fix typo in README.
ed22cfa Small cleanup of README.
65e712d Merge branch 'knepley/fix-faults-parallel'
98ca619 Switch to HDF5Ext in one 3d/tet4 full scale test.
b9c1c2f Adjust DataWriterHDF5Ext info dataset dimensions to match DataWriterHDF5.
b6e4cef Fix bug in creating scatter vec.
2176e00 Merge branch 'knepley/fix-faults-parallel'
a5a35df Update make clean target.
85fe996 Fix for parallel faults (not all procs with faults have fault edges).
32d65f2 Merge branch 'knepley/fix-faults-parallel'
f795a04 Add more info about solver tolerances for friction in quasi static simulations.
d42a67a Merge branch 'knepley/fix-faults-parallel'
2c89b41 Added initial version of 2D gravity example
bcb96d1 Added README.
ef23bb5 Delete log files I didn't mean to include.
311f1fb Removed spatial database files that are created by python script.
9973088 Finished setting up gravity example. Need to have Brad and Matt test it.
4aa67e7 Removed obsolete contour meshing example (covered by 3-D subduction).
b1df679 Improve subduction meshing example. Make Trelis compatible.
3fb8651 Fixed typo.
2c5c061 Updated meshing README.
c5a9dbe Small improvements to 2-D gravity example.
256700b Updated geometry journal file based on updated surfaces (change in ids).
e006604 Merge branch 'baagaard/fix-meshing-examples-trelis' into next
4755072 Merge branch 'williams/add-examples-grav2d' into next
216c270 Started work on debugging examples.
7cca7f5 Fixed geometry.jou to be consistent with mesh.
a533b74 Updated for change in ids (works for CUBIT 14.1 and Trelis 15.0).
de19572 Fixed meshing for examples/2d/greensfns/reverse. No object ids used.
a3f0b9d Updated to remove vertices while creating splines.
6075897 Switched to IDless journal files. Minor cleanup.
70cf4b4 Cleanup of APREPRO lines.
c88c85a Cleanup of APREPRO lines.
cc342c0 Cleanup of APREPRO lines.
48c3a10 Merge branch 'baagaard/fix-meshing-examples-trelis' into next
62e1b35 Increment version number to 2.0.1. Added release notes.
6531fb1 Remove old directory from Makefile.
346e2da Improve error message for fault quadrature check.
4c242aa Merge branch 'baagaard/fix-meshing-examples-trelis'
652e97a Merge branch 'baagaard/add-release-2.0.1'
7d225ab Added files for examples/debugging.
8c20934 Cleanup some error messages.
23b1ff7 Introduce some errors into spatialdb file.
33663fc Small adjustments to errors.
7d4a694 Add more errors into mat_elastic and step02.
3426804 Finished setting up files with error and correct files. Moved correct files to correct directory.
a93bb2f Accidentally removed errors.
e1d7948 Added files to Makefile.
11d0883 Added files to Makefile.
37686d9 Fixed typo in comment.
d58a6b5 Updated spline creation for compatibility with Trelis.
e4f9c02 Update configure.ac for obsolete directories (removed).
e629874 Merge branch 'master' into next
ecbbb12 Merge branch 'baagaard/add-examples-debugging' into next
9e9b3eb Merge branch 'baagaard/fix-meshing-examples-trelis' into next
6753495 Solver: Remove DM from Vecs used in MatNullSpace - This avoids a reference cycle
2bae138 Field: Setup DM field objects
ffaa715 Merge branch 'knepley/fix-dm-composition' into next
697fa11 Added debugging to examples Makefile. Updated filenames in debugging Makefile.
875d67f Added README to examples/debugging.
5fde715 Incremented version number and updated README.
9459c95 Merge branch 'baagaard/fix-meshing-examples-trelis'
c54ad80 Merge commit '2bae13870c3a01dd4a1acceca3c441956f78eb01'
3dde946 Merge branch 'baagaard/add-missing-files-dist'
ab8c3c6 Merge branch 'baagaard/add-examples-debugging'
58902f3 Merge branch 'baagaard/add-release-2.0.2'
229a1df Improved some error messages.
c8e4d80 Merge branch 'baagaard/fix-error-messages'
3dcf71c Added test case for embedded fault and initial state for friction.
4592ba1 Code formatting cleanup.
954bfb2 Fixed bug in overzealous size checking.
8fb67f5 Turn on field split, remove marking of buried edges.
c51f9ba Fault: Replace logic using clamped label with logic using _cohesiveVertices[] - This makes all parts agree on fault definition
78ec935 Upgrade to new PETSc release
3122a34 Merge remote-tracking branch 'origin/baagaard/fix-friction-initial-state' into next
e0cb277 Finished embedded fault test with friction and field split w/custom fault PC.
58b1053 Merge branch 'baagaard/fix-friction-initial-state' into next
a0be517 Merge branch 'baagaard/fix-friction-initial-state'
87981e9 Updated Makfiles to eliminate warnings.
692eaf2 Remove obsolete mesh generation test files.
a53c18e Update pytest files for automake 1.13.
87db39c Add local target for verbose test running.
da4bbde More cleanup for changes in automake test target.
79f86a6 Create module.am for stuff common to all Python modules.
cdf4794 Add checks for Python header file and shared library.
91f13fa Merge branch 'baagaard/update-autoconf' into next
bb0e108 Merge branch 'baagaard/update-autoconf'
cd234e9 Increment to v2.0.3.
f6e8e40 Updated to v2.0.3.
a31c29b Updated CHANGES to point to Git repo commits.
c42ce77 Merge branch 'baagaard/add-release-2.0.3'
d5e21df Fix error in making source distribution.
c73d23a Merge branch 'baagaard/update-autoconf'
9314577 Small fixes to release announcement.
09adf84 Merge branch 'baagaard/add-release-2.0.3'
eca13b5 Change DMPlexGet/SetDImension() to DMGet/SetDimension()
9bcda6d Update PETSc version check
984ba78 Another update for PETSc 3.5.1 in libtests.
904047b Merge branch 'knepley/upgrade-petsc-3.5' into next
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