[CIG-LONG] Gale in 3D

[Walter Landry]

Rainer Nerlich <rainer at simula.no> wrote:
> Hi Walter,
> 
> thanks very much for your quick reply! It's good to hear that everything
> works just fine on your system! Hopefully it will work on mine soon as
> well...
> 
> I have attached the two files you were asking for. I have also attached the
> SConfigure script. As I said, I had problems to tell Gale where libxml2 and
> PETSc are located at on my computer. Using for example (as I have tested
> many different ways):
> 
> ./configure.sh --petsc-dir=/home/software/petsc-3.2-p7
> --petsc-arch=arch-linux2-c-debug --libxml2-lib-dir=/usr/include/libxml2
> 
> did not work. Changing the SConfigure script a bit was the only way, i.e.
> by including the following lines:
> 
> #
> # Perform configuration.
> #
> env.MergeFlags('-I/usr/include/libxml2')
> env.MergeFlags('-I/home/simula/software/petsc-3.2-p7/include')
> 
> MPI and HDF5 were found without a problem. The compilation process worked
> normally afterwards. Hopefully you can see from these files where I did the
> mistake.

Something odd is happening here.  The configure script should have
found libxml2 automatically.  Did you update all of the
sub-directories, including the "config" directiory?  Can you try running

  hg pull
  hg update

in the directories

  PICellerator
  StGermain
  StDomain
  StgFEM
  Underworld
  gLucifer
  config

Cheers,
Walter Landry