[CIG-LONG] compiling Gale on a supercomputer

Robert Gray graywacke at gmail.com
Thu May 24 12:30:29 PDT 2012


Still can't find libXML2 with:

./configure.sh --hdf5-dir=$SCINET_HDF5_BASE --cxxflags="-std=c++0x"
--linkflags="-lX11 -L/scinet/gpc/intel/mkl/lib/em64t -lmkl_lapack".

Again, I've attached the config.log file.
Cheers,
Rob

On Thu, May 24, 2012 at 3:00 PM, Walter Landry <wlandry at caltech.edu> wrote:

> Robert Gray <graywacke at gmail.com> wrote:
> > Failed to locate libXML2:
> > ****  ERROR ****
> > Failed to locate required package libXML2.
> > I've attached the config.log file.
>
> Sorry.  My mistake.  Try just -lmkl_lapack.  There is no libmkl.so.
>
> Also, I noticed that in this config.log, the compiler is icpc.  You
> probably want to use an mpi wrapped version such as mpicxx.  You can
> do that by setting "--cxx=mpicxx".
>
> Cheers,
> Walter Landry
>
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