[CIG-LONG] compiling Gale on a supercomputer

[Walter Landry]

Robert Gray <graywacke at gmail.com> wrote:
> Still can't find libXML2 with:
> 
> ./configure.sh --hdf5-dir=$SCINET_HDF5_BASE --cxxflags="-std=c++0x" --linkflags="-lX11 -L/
> scinet/gpc/intel/mkl/lib/em64t -lmkl_lapack". 

This is looking better.  You need to link in additional mkl libraries.
Going by what I see at

  http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/

My guess is linkflags should be

  --linkflags="-lX11 -L/scinet/gpc/intel/mkl/lib/em64t -lmkl_lapack -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -openmp -pthread -lm"

You may have to change 

  -lmkl_intel_lp64

to

  -lmkl_intel_ilp64

depending on how petsc is configured.

Cheers,
Walter Landry