[CIG-LONG] CIG-LONG Digest, Vol 92, Issue 1

Tue Jan 10 13:25:37 PST 2017

This appears to be an issue with linking to lapack.

If you are not using REP in your simulation, it would probably be easiest
to simply remove the offending call to dgesv.

Though I agree with John, you might be better off looking at more modern
options.

On 11 January 2017 at 07:00, <cig-long-request at geodynamics.org> wrote:

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> Today's Topics:
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>    1. gale-1.6.1 error during build (Hao Lu (hlu1))
>    2. Re: gale-1.6.1 error during build (John Naliboff)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sun, 8 Jan 2017 08:54:25 +0000
> From: "Hao Lu (hlu1)" <hlu1 at memphis.edu>
> To: "cig-long at geodynamics.org" <cig-long at geodynamics.org>
> Subject: [CIG-LONG] gale-1.6.1 error during build
> Message-ID:
>         <MWHPR04MB020993890FB156C8741E1D6E87650 at MWHPR04MB0209.
> namprd04.prod.outlook.com>
>
> Content-Type: text/plain; charset="gb2312"
>
> Hello,
>
>
> I am a student in UM and I am doing research and I need to use gale-1.6.1,
> not the newer version.
>
>
> I have an error during running ./scons:
>
>
> mpicc -o build/bin/Gale -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/lib
> -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib
> -Wl,-rpath=/home/hlu1/Gale-1_6_1/build/lib StGermain/src/main.o
> build/StGermain/stg_static_modules.o -L/home/hlu1/petsc-3.0.0-p12/lib
> -L/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Lbuild/lib
> -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu
> -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lxml2
> -lf2clapack -lf2cblas -lm -lnsl -lrt -ldl
>
> build/lib/libUnderworld.a(REP_Algorithm.os): In function
> `_REP_Algorithm_Solver':
>
> /home/hlu1/Gale-1_6_1/Underworld/Utils/src/REP_Algorithm.c:524: undefined
> reference to `dgesv_'
>
> collect2: error: ld returned 1 exit status
>
> scons: *** [build/bin/Gale] Error 1
>
> scons: building terminated because of errors.
>
>
> I am not sure what to do at this stage. If you would please give me some
> recommendations.
>
>
> Best regards,
>
>
> Hao
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> ------------------------------
>
> Message: 2
> Date: Mon, 9 Jan 2017 21:22:23 -0800
> From: John Naliboff <jbnaliboff at ucdavis.edu>
> To: cig-long at geodynamics.org
> Subject: Re: [CIG-LONG] gale-1.6.1 error during build
> Message-ID: <723FDCBF-89A3-424B-85D2-76B89541E6B8 at ucdavis.edu>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Hao,
>
> It’s been quite a while since I’ve used GALE and I unfortunately have no
> idea if their is a quick fix for the error below.  Do note that GALE is no
> longer officially supported by CIG and we do not recommend using it given
> that there are a number of better options for long-term tectonic problems.
>
> If you would like, happy to provide a list a codes that may work for the
> type of problem your are tackling.
>
> Cheers,
> John
>
> *************************************************
> John Naliboff
> Assistant Project Scientist, CIG
> Earth & Planetary Sciences Dept., UC Davis
>
>
>
> > On Jan 8, 2017, at 12:54 AM, Hao Lu (hlu1) <hlu1 at memphis.edu> wrote:
> >
> > Hello,
> >
> > I am a student in UM and I am doing research and I need to use
> gale-1.6.1, not the newer version.
> >
> > I have an error during running ./scons:
> >
> > mpicc -o build/bin/Gale -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/lib
> -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib
> -Wl,-rpath=/home/hlu1/Gale-1_6_1/build/lib StGermain/src/main.o
> build/StGermain/stg_static_modules.o -L/home/hlu1/petsc-3.0.0-p12/lib
> -L/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Lbuild/lib
> -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu
> -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lxml2
> -lf2clapack -lf2cblas -lm -lnsl -lrt -ldl
> > build/lib/libUnderworld.a(REP_Algorithm.os): In function
> `_REP_Algorithm_Solver':
> > /home/hlu1/Gale-1_6_1/Underworld/Utils/src/REP_Algorithm.c:524:
> undefined reference to `dgesv_'
> > collect2: error: ld returned 1 exit status
> > scons: *** [build/bin/Gale] Error 1
> > scons: building terminated because of errors.
> >
> > I am not sure what to do at this stage. If you would please give me some
> recommendations.
> >
> > Best regards,
> >
> > Hao
> > _______________________________________________
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> End of CIG-LONG Digest, Vol 92, Issue 1
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