[CIG-MC] problem launching citcoms without Batch system
Robert Moucha
rmoucha at gmail.com
Wed May 14 13:13:45 PDT 2008
Hello all,
Just wondering if anyone else had a problem launching citcoms without
the use of a Batch system. It appears that the job is launched only
on the head node. I installed the latest 3.0.2 version and issued the
following command in a working directory (the path to the
CitcomS-3.0.2/bin is set)
$ citcoms example1.cfg mymachines4.cfg --solver.datadir=/state/partition1/test
Cannot make new directory '/state/partition1/test'
Cannot make new directory '/state/partition1/test'
Cannot make new directory '/state/partition1/test'
Cannot make new directory '/state/partition1/test'
--pyre-start: mpirun: exit 8
/home/moucha/CitcomS-3.0.2/bin/citcoms:
/home/moucha/CitcomS-3.0.2/bin/pycitcoms: exit 1
The file mymachines4.cfg contains:
[CitcomS.launcher]
nodegen = c0-%g
nodelist = [1-4]
The mpirun.nodes file has:
c0-1
c0-2
c0-3
c0-4
which is correct for our cluster.
The above error makes sense, because I don't have write privileges to
/state directory on the head node. If I changed the datadir parameter
to a directory that I have write access to on the head node, the
program runs without a problem (but only on the head node).
Incidentally, the following command runs without problem on the
compute nodes:
mpirun -nolocal -np 4 -machinefile mpirun.nodes
~/CitcomS-3.0.2/bin/CitcomSRegional example1b.cfg
I'm using Python 2.4.5, gcc-3.4.6, mpich 1.2.7p1 (can provide further
info if need be).
Thanks
Rob
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