[CIG-MC] running citcoms using pbs scheduler

[Eh Tan]

Hi Clint,

You can add the following lines to your input cfg file:

    [CitcomS.scheduler]
    qsub-options = "-A STAFF0000"


This is a generic option. You can add arbitrary PBS options via:
     qsub-options = opt1,opt2,...


Cheers,
Eh Tan
-------
Postdoc
Institute of Geophysics
University of Texas, Austin
J.J. Pickle Research Campus, Bldg 196 (ROC)
10100 Burnet Rd. (R2200),
Austin, TX 78758-4445
(512) 475-9568


CLINT CONRAD wrote:
> Hi,
>
> I am setting up some CitcomS runs on a new shared system.  We are 
> required to submit jobs using the pbs system in a slightly different 
> way than I have done before. Specifically, we have to submit an 
> account number using
> #PBS -A accountnumber
> It seems that -A is not included in the job or scheduler options that 
> you can set in the Citcom.cfg file.
> (the available options are: name, queue, walltime, stdin, stdout, and 
> stderr). Is there an easy way to run citcom using pbs scheduler
> that allows me to input the account? I've pasted a sample pbs script 
> below for running on this system.
>
> Thanks in advance for any help!
> Clint
>
> #!/bin/bash
> # 10 minute wall time
> #PBS -l walltime=00:10:00
> # selecting 2 nodes = 2 * 4 = 8 processors for use, mpiprocs needs to 
> equal ncpus and doesn't exceed 4
> #PBS -l select=2:mpiprocs=4:ncpus=4
> # scatter required
> #PBS -l place=scatter
> # account required
> #PBS -A STAFF0000
>
> cd $PBS_O_WORKDIR
> echo "RUNNING ON: `/usr/bin/uniq $PBS_NODEFILE`" 
> # note you must use mpirun_jaws to submit MPI jobs on our cluster
> mpirun_jaws ./my_openmpi_executable
>
>
>
>
>
> ---------------------------------------------
> Clint Conrad              Assistant Professor
> Dept. Geology & Geophysics,  SOEST,  804 POST
> Univ. Hawaii at Manoa        ph: 808-956-6649
> 1680 East-West Road         fax: 808-956-5154
> Honolulu, HI 96822          clintc at hawaii.edu <mailto:clintc at hawaii.edu>
> http://www.soest.hawaii.edu/GG/FACULTY/conrad
> ---------------------------------------------
>
>
>
>
>
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>
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-- 
Eh Tan
-------
Postdoc
Institute of Geophysics
University of Texas, Austin
J.J. Pickle Research Campus, Bldg 196 (ROC)
10100 Burnet Rd. (R2200),
Austin, TX 78758-4445
(512) 475-9568