[CIG-SEISMO] SPECFEM3DCartesian crashes during generate_databases

[Liberman, Vladimir - 0881 - MITLL]

I have a  job that keeps dying. It successfully decomposes databases, but
keeps dying during the "generate databases" step. The only  unusual feature
of my meshed geometry is that it is composed of one very large body and then
a lot of very small bodies.

 

The last line from the "output_mesher.txt" file is 

"saving mesh files for AVS, OpenDX, Paraview"

 

And then the job crashes...

 

 

The log from the job file says

Running Shell Script

At line 183 of file src/generate_databases/save_arrays_solver.f90 (unit =
41, file = './OUTPUT_FILES/DATABASES_MPI/proc000163_external_mesh.bin')

Fortran runtime error: Input/output error

At line 401 of file src/generate_databases/save_arrays_solver.f90 (unit =
41, file = './OUTPUT_FILES/DATABASES_MPI/proc000150_y.bin')

Fortran runtime error: Cannot send after transport endpoint shutdown

At line 106 of file src/generate_databases/save_arrays_solver.f90 (unit =
41, file = './OUTPUT_FILES/DATABASES_MPI/proc000143_external_mesh.bin')

Fortran runtime error: Cannot send after transport endpoint shutdown

-------------------------------------------------------

Primary job  terminated normally, but 1 process returned

a non-zero exit code.. Per user-direction, the job has been aborted.

 

Staff  Member, Chemical, Microsystem, and Nanoscale Technologies Group
MIT Lincoln Laboratory               E-mail:  <mailto:vlad at ll.mit.edu>
vlad at ll.mit.edu
Room C-137                              Phone: 781 981 3706
244 Wood St.                            Fax:     781 981 4983
Lexington, MA 02420-9108

http://www.ll.mit.edu/mission/electronics/cmnt/bios/liberman-v.html

 

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