[CIG-SEISMO] Specfem3d_Globe Movie problem

[Dimitri Komatitsch]

Hi,

Thanks. If your model is big it is maybe a movie array for which your 
system runs out of memory and for which we do not test the exit value of 
the allocate() statement.

Could you configure with --enable-debug and let us know if the run then 
detects anything useful?

Thank you,
Best regards,
Dimitri.

On 03/28/2018 04:58 PM, Inchin, Pavel wrote:
> Good day,
> 
> I have a problem with running of SPECFEM3D Globe on a cluster.
> 
> When I run it with
> MOVIE_SURFACE = .false. and MOVIE_VOLUME=.false., the simulation runs 
> without problems.
> 
> But if I want to output movie, xspecfem3D gives error:
> 
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image              PC                Routine            Line        Source
> xspecfem3D         00000000006376E4  Unknown               Unknown  Unknown
> libpthread-2.17.s  00002AAAAC1C95E0  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CF907  Unknown               Unknown  Unknown
> xspecfem3D         00000000004F0E18  Unknown               Unknown  Unknown
> xspecfem3D         00000000004EF900  Unknown               Unknown  Unknown
> xspecfem3D         0000000000507C23  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CA25D  Unknown               Unknown  Unknown
> xspecfem3D         00000000004044DE  Unknown               Unknown  Unknown
> libc-2.17.so  00002AAAAC6F9C05  __libc_start_main     Unknown  Unknown
> xspecfem3D         00000000004043E9  Unknown               Unknown  Unknown
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image              PC                Routine            Line        Source
> xspecfem3D         00000000006376E4  Unknown               Unknown  Unknown
> libpthread-2.17.s  00002AAAAC1C95E0  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CF907  Unknown               Unknown  Unknown
> xspecfem3D         00000000004F0E18  Unknown               Unknown  Unknown
> xspecfem3D         00000000004EF900  Unknown               Unknown  Unknown
> xspecfem3D         0000000000507C23  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CA25D  Unknown               Unknown  Unknown
> xspecfem3D         00000000004044DE  Unknown               Unknown  Unknown
> libc-2.17.so  00002AAAAC6F9C05  __libc_start_main     Unknown  Unknown
> xspecfem3D         00000000004043E9  Unknown               Unknown  Unknown
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image              PC                Routine            Line        Source
> xspecfem3D         00000000006376E4  Unknown               Unknown  Unknown
> libpthread-2.17.s  00002AAAAC1C95E0  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CF907  Unknown               Unknown  Unknown
> xspecfem3D         00000000004F0E18  Unknown               Unknown  Unknown
> xspecfem3D         00000000004EF900  Unknown               Unknown  Unknown
> xspecfem3D         0000000000507C23  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CA25D  Unknown               Unknown  Unknown
> xspecfem3D         00000000004044DE  Unknown               Unknown  Unknown
> libc-2.17.so  00002AAAAC6F9C05  __libc_start_main     Unknown  Unknown
> xspecfem3D         00000000004043E9  Unknown               Unknown  Unknown
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image              PC                Routine            Line        Source
> xspecfem3D         00000000006376E4  Unknown               Unknown  Unknown
> libpthread-2.17.s  00002AAAAC1C95E0  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CF907  Unknown               Unknown  Unknown
> xspecfem3D         00000000004F0E18  Unknown               Unknown  Unknown
> xspecfem3D         00000000004EF900  Unknown               Unknown  Unknown
> xspecfem3D         0000000000507C23  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CA25D  Unknown               Unknown  Unknown
> xspecfem3D         00000000004044DE  Unknown               Unknown  Unknown
> libc-2.17.so  00002AAAAC6F9C05  __libc_start_main     Unknown  Unknown
> xspecfem3D         00000000004043E9  Unknown               Unknown  Unknown
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image              PC                Routine            Line        Source
> xspecfem3D         00000000006376E4  Unknown               Unknown  Unknown
> libpthread-2.17.s  00002AAAAC1C95E0  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CF907  Unknown               Unknown  Unknown
> xspecfem3D         00000000004F0E18  Unknown               Unknown  Unknown
> xspecfem3D         00000000004EF900  Unknown               Unknown  Unknown
> xspecfem3D         0000000000507C23  Unknown               Unknown  Unknown
> xspecfem3D         00000000005CA25D  Unknown               Unknown  Unknown
> xspecfem3D         00000000004044DE  Unknown               Unknown  Unknown
> libc-2.17.so  00002AAAAC6F9C05  __libc_start_main     Unknown  Unknown
> xspecfem3D         00000000004043E9  Unknown               Unknown  Unknown
> ………….
> 
> I compile using: ./configure FC=mpiifort MPIFC=mpiifort 
> -mcmodel=medium-shared-intel
> 
> And my modules are:
> intel/compiler/64/2017/17.0.5
> intel/mpi/64/2017/5.239
> 
> 
> I found this issue raised earlier 
> (https://github.com/geodynamics/specfem3d/issues/512), but with running 
> of the model by itself and not for movie…
> 
> Could you provide a direction where to find a reason for that?
> 
> Thank you
> Paul
> 
> 
> 
> _______________________________________________
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> 

-- 
Dimitri Komatitsch, CNRS Research Director (DR CNRS)
Laboratory of Mechanics and Acoustics, Marseille, France
http://komatitsch.free.fr