[CIG-SHORT] pylith error
Christopher DiCaprio
dicaprio at gps.caltech.edu
Wed Sep 26 15:06:14 PDT 2007
I've added the --enable-pythia flag and redone configure; make; make
install. geocoordsmodule.so now exists in $PREFIX/lib/python2.4/site-
packages/spatialdata/geocoords/
I added the files from proj-datumgrid-1.3.zip to $PREFIX/share/proj.
The libtests (does it know to look for the datum shifts in $PREFIX/
share/proj?) and pytests still fail. I've attached the output.
Does pylith link statically to anything in spatialdata or is it OK to
not rebuild pylith?
On the up side this works, which didn't before:
------------------------------------------------------------------------
------------
klaki:~> pylith --help
component 'pylithapp'
properties: help, help-components, help-persistence, help-
properties, job, launcher, mesh_generator, nodes, petsc, problem,
scheduler, typos, weaver
facilities:
job,launcher,mesh_generator,petsc,problem,scheduler,weaver
For more information:
--help-properties: prints details about user settable properties
--help-components: prints details about user settable facilities
and components
------------------------------------------------------------------------
------------
Unfortunately, it still fails when I try to run a model:
------------------------------------------------------------------------
------------------------------------------------------------------------
------------------------
klaki:examples/twocells/twotri3> pylith dislocation.cfg
Traceback (most recent call last):
File "<string>", line 1, in ?
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pythia-0.8.1.4-py2.4.egg/pyre/schedulers/__init__.py", line
53, in jobstart
kwds = kwds)
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/__init__.py",
line 41, in start
shell.run(**kwds)
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/Shell.py", line
139, in run
method(*args, **kwds)
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/SuperScript.py",
line 47, in execute
self.subscript = self.createSubscript(subscriptName)
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/AppRunner.py",
line 25, in createSubscript
cls = loadObject(name)
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/merlin-1.3.egg/merlin/__init__.py", line 2707, in loadObject
obj = __import__(module, globals(), globals(), ['__name__'])
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/PyLithApp.py", line 20, in ?
class PyLithApp(Application):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/PyLithApp.py", line 27, in PyLithApp
class Inventory(Application.Inventory):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/PyLithApp.py", line 50, in Inventory
from pylith.problems.TimeDependent import TimeDependent
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/problems/TimeDependent.py", line 20, in ?
from Problem import Problem
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/problems/Problem.py", line 22, in ?
class Problem(Component):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/problems/Problem.py", line 31, in Problem
class Inventory(Component.Inventory):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/problems/Problem.py", line 51, in Inventory
from pylith.materials.Homogeneous import Homogeneous
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/Homogeneous.py", line 22, in ?
class Homogeneous(ObjectBin):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/Homogeneous.py", line 31, in Homogeneous
class Inventory(ObjectBin.Inventory):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/Homogeneous.py", line 47, in Inventory
from ElasticIsotropic3D import ElasticIsotropic3D
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/ElasticIsotropic3D.py", line 19, in ?
from ElasticMaterial import ElasticMaterial
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/ElasticMaterial.py", line 20, in ?
from Material import Material
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/Material.py", line 30, in ?
class Material(Component):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/Material.py", line 43, in Material
class Inventory(Component.Inventory):
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/pylith/materials/Material.py", line 67, in Inventory
from spatialdata.spatialdb.SimpleDB import SimpleDB
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/spatialdata-0.3.0-py2.4.egg/spatialdata/spatialdb/
SimpleDB.py", line 19, in ?
from SpatialDB import SpatialDB
File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
packages/spatialdata-0.3.0-py2.4.egg/spatialdata/spatialdb/
SpatialDB.py", line 21, in ?
import spatialdb as bindings
ImportError: No module named spatialdb
/home/dicaprio/local/pylith-build/bin/pylith: /home/dicaprio/local/
pylith-build/bin/nemesis: exit 1
------------------------------------------------------------------------
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------------------------
Thanks,
Chris
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On Sep 26, 2007, at 12:36 PM, Brad Aagaard wrote:
> On Wednesday 26 September 2007, Christopher DiCaprio wrote:
>> I'm on a 32 bit machine. The only place where the pytests and
>> libtests directories are located are in the build directory
>> (everything is under a directory called pylith-build so it's a bit
>> misleading); is that an error?
>
> No. The tests are run from the build (they aren't part of the
> installation).
>
>> There is no geocoordsmodule.so file only libspatialdata.so
>
> You need to configure with --enable-pythia to build the modules.
> The default
> is to allow spatialdata to be used without Python.
>
> Brad
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