[CIG-SHORT] pylith error

[Matthew Knepley]

Are you Absolutely sure that the spatialdb module is in your PYTHONPATH?
This is exactly the error you would get if it is not. You can simply test this:

  shell> python
  python> import spatialdb

which
 is what that code is doing.
  Matt

On 9/26/07, Christopher DiCaprio <dicaprio at gps.caltech.edu> wrote:
> I've added the --enable-pythia flag and redone configure; make; make
> install.  geocoordsmodule.so now exists in $PREFIX/lib/python2.4/site-
> packages/spatialdata/geocoords/
>
> I added the files from proj-datumgrid-1.3.zip to $PREFIX/share/proj.
>
> The libtests (does it know to look for the datum shifts in $PREFIX/
> share/proj?) and pytests still fail.  I've attached the output.
>
> Does pylith link statically to anything in spatialdata or is it OK to
> not rebuild pylith?
>
> On the up side this works, which didn't before:
> ------------------------------------------------------------------------
> ------------
> klaki:~> pylith --help
> component 'pylithapp'
>      properties: help, help-components, help-persistence, help-
> properties, job, launcher, mesh_generator, nodes, petsc, problem,
> scheduler, typos, weaver
>      facilities:
> job,launcher,mesh_generator,petsc,problem,scheduler,weaver
> For more information:
>    --help-properties: prints details about user settable properties
>    --help-components: prints details about user settable facilities
> and components
> ------------------------------------------------------------------------
> ------------
>
> Unfortunately, it still fails when I try to run a model:
> ------------------------------------------------------------------------
> ------------------------------------------------------------------------
> ------------------------
> klaki:examples/twocells/twotri3> pylith dislocation.cfg
> Traceback (most recent call last):
>    File "<string>", line 1, in ?
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pythia-0.8.1.4-py2.4.egg/pyre/schedulers/__init__.py", line
> 53, in jobstart
>      kwds = kwds)
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/__init__.py",
> line 41, in start
>      shell.run(**kwds)
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/Shell.py", line
> 139, in run
>      method(*args, **kwds)
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/SuperScript.py",
> line 47, in execute
>      self.subscript = self.createSubscript(subscriptName)
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/AppRunner.py",
> line 25, in createSubscript
>      cls = loadObject(name)
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/merlin-1.3.egg/merlin/__init__.py", line 2707, in loadObject
>      obj = __import__(module, globals(), globals(), ['__name__'])
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/PyLithApp.py", line 20, in ?
>      class PyLithApp(Application):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/PyLithApp.py", line 27, in PyLithApp
>      class Inventory(Application.Inventory):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/PyLithApp.py", line 50, in Inventory
>      from pylith.problems.TimeDependent import TimeDependent
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/problems/TimeDependent.py", line 20, in ?
>      from Problem import Problem
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/problems/Problem.py", line 22, in ?
>      class Problem(Component):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/problems/Problem.py", line 31, in Problem
>      class Inventory(Component.Inventory):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/problems/Problem.py", line 51, in Inventory
>      from pylith.materials.Homogeneous import Homogeneous
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/Homogeneous.py", line 22, in ?
>      class Homogeneous(ObjectBin):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/Homogeneous.py", line 31, in Homogeneous
>      class Inventory(ObjectBin.Inventory):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/Homogeneous.py", line 47, in Inventory
>      from ElasticIsotropic3D import ElasticIsotropic3D
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/ElasticIsotropic3D.py", line 19, in ?
>      from ElasticMaterial import ElasticMaterial
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/ElasticMaterial.py", line 20, in ?
>      from Material import Material
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/Material.py", line 30, in ?
>      class Material(Component):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/Material.py", line 43, in Material
>      class Inventory(Component.Inventory):
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/pylith/materials/Material.py", line 67, in Inventory
>      from spatialdata.spatialdb.SimpleDB import SimpleDB
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/spatialdata-0.3.0-py2.4.egg/spatialdata/spatialdb/
> SimpleDB.py", line 19, in ?
>      from SpatialDB import SpatialDB
>    File "/home/dicaprio/local/pylith-build/lib/python2.4/site-
> packages/spatialdata-0.3.0-py2.4.egg/spatialdata/spatialdb/
> SpatialDB.py", line 21, in ?
>      import spatialdb as bindings
> ImportError: No module named spatialdb
> /home/dicaprio/local/pylith-build/bin/pylith: /home/dicaprio/local/
> pylith-build/bin/nemesis: exit 1
> ------------------------------------------------------------------------
> ------------------------------------------------------------------------
> ------------------------
>
>
>
> Thanks,
> Chris
>
>
>
>
>
>
> On Sep 26, 2007, at 12:36 PM, Brad Aagaard wrote:
>
> > On Wednesday 26 September 2007, Christopher DiCaprio wrote:
> >> I'm on a 32 bit machine.  The only place where the pytests and
> >> libtests directories are located are in the build directory
> >> (everything is under a directory called pylith-build so it's a bit
> >> misleading); is that an error?
> >
> > No. The tests are run from the build (they aren't part of the
> > installation).
> >
> >> There is no geocoordsmodule.so file only libspatialdata.so
> >
> > You need to configure with --enable-pythia to build the modules.
> > The default
> > is to allow spatialdata to be used without Python.
> >
> > Brad
>
>
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which
their experiments lead.
-- Norbert Wiener