[CIG-SHORT] pylith error

[Leif Strand]

Chris,

Delete the directory 'spatialdata-0.3.0-py2.4.egg' under 
'site-packages'.  It isn't supposed to be there (it may have been 
created if spatialdata's 'setup.py' was run directly).  There should be 
two spatialdata-related directories under 'site-packages', as follows:

spatialdata
spatialdata.egg-info

--Leif


Christopher DiCaprio wrote:
> I've added the --enable-pythia flag and redone configure; make; make 
> install.  geocoordsmodule.so now exists in 
> $PREFIX/lib/python2.4/site-packages/spatialdata/geocoords/
> 
> I added the files from proj-datumgrid-1.3.zip to $PREFIX/share/proj.
> 
> The libtests (does it know to look for the datum shifts in 
> $PREFIX/share/proj?) and pytests still fail.  I've attached the output.
> 
> Does pylith link statically to anything in spatialdata or is it OK to 
> not rebuild pylith?
> 
> On the up side this works, which didn't before:
> ------------------------------------------------------------------------------------ 
> 
> klaki:~> pylith --help
> component 'pylithapp'
>     properties: help, help-components, help-persistence, 
> help-properties, job, launcher, mesh_generator, nodes, petsc, problem, 
> scheduler, typos, weaver
>     facilities: job,launcher,mesh_generator,petsc,problem,scheduler,weaver
> For more information:
>   --help-properties: prints details about user settable properties
>   --help-components: prints details about user settable facilities and 
> components
> ------------------------------------------------------------------------------------ 
> 
> 
> Unfortunately, it still fails when I try to run a model:
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 
> 
> klaki:examples/twocells/twotri3> pylith dislocation.cfg
> Traceback (most recent call last):
>   File "<string>", line 1, in ?
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pythia-0.8.1.4-py2.4.egg/pyre/schedulers/__init__.py", 
> line 53, in jobstart
>     kwds = kwds)
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/__init__.py", 
> line 41, in start
>     shell.run(**kwds)
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/Shell.py", 
> line 139, in run
>     method(*args, **kwds)
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/SuperScript.py", 
> line 47, in execute
>     self.subscript = self.createSubscript(subscriptName)
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pythia-0.8.1.4-py2.4.egg/pyre/applications/AppRunner.py", 
> line 25, in createSubscript
>     cls = loadObject(name)
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/merlin-1.3.egg/merlin/__init__.py", 
> line 2707, in loadObject
>     obj = __import__(module, globals(), globals(), ['__name__'])
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/PyLithApp.py", 
> line 20, in ?
>     class PyLithApp(Application):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/PyLithApp.py", 
> line 27, in PyLithApp
>     class Inventory(Application.Inventory):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/PyLithApp.py", 
> line 50, in Inventory
>     from pylith.problems.TimeDependent import TimeDependent
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/problems/TimeDependent.py", 
> line 20, in ?
>     from Problem import Problem
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/problems/Problem.py", 
> line 22, in ?
>     class Problem(Component):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/problems/Problem.py", 
> line 31, in Problem
>     class Inventory(Component.Inventory):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/problems/Problem.py", 
> line 51, in Inventory
>     from pylith.materials.Homogeneous import Homogeneous
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/Homogeneous.py", 
> line 22, in ?
>     class Homogeneous(ObjectBin):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/Homogeneous.py", 
> line 31, in Homogeneous
>     class Inventory(ObjectBin.Inventory):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/Homogeneous.py", 
> line 47, in Inventory
>     from ElasticIsotropic3D import ElasticIsotropic3D
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/ElasticIsotropic3D.py", 
> line 19, in ?
>     from ElasticMaterial import ElasticMaterial
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/ElasticMaterial.py", 
> line 20, in ?
>     from Material import Material
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/Material.py", 
> line 30, in ?
>     class Material(Component):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/Material.py", 
> line 43, in Material
>     class Inventory(Component.Inventory):
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/pylith/materials/Material.py", 
> line 67, in Inventory
>     from spatialdata.spatialdb.SimpleDB import SimpleDB
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/spatialdata-0.3.0-py2.4.egg/spatialdata/spatialdb/SimpleDB.py", 
> line 19, in ?
>     from SpatialDB import SpatialDB
>   File 
> "/home/dicaprio/local/pylith-build/lib/python2.4/site-packages/spatialdata-0.3.0-py2.4.egg/spatialdata/spatialdb/SpatialDB.py", 
> line 21, in ?
>     import spatialdb as bindings
> ImportError: No module named spatialdb
> /home/dicaprio/local/pylith-build/bin/pylith: 
> /home/dicaprio/local/pylith-build/bin/nemesis: exit 1
> ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 
> 
> 
> 
> 
> Thanks,
> Chris
> 
> 
> 
> 
> 
> On Sep 26, 2007, at 12:36 PM, Brad Aagaard wrote:
> 
>> On Wednesday 26 September 2007, Christopher DiCaprio wrote:
>>> I'm on a 32 bit machine.  The only place where the pytests and
>>> libtests directories are located are in the build directory
>>> (everything is under a directory called pylith-build so it's a bit
>>> misleading); is that an error?
>>
>> No. The tests are run from the build (they aren't part of the 
>> installation).
>>
>>> There is no geocoordsmodule.so file only libspatialdata.so
>>
>> You need to configure with --enable-pythia to build the modules. The 
>> default
>> is to allow spatialdata to be used without Python.
>>
>> Brad
> 
> 
> ------------------------------------------------------------------------
> 
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