[CIG-SHORT] Pylith error

Jiangning Lu jlu at chandler.mit.edu
Tue Feb 12 15:44:51 PST 2008


Hi,

I run into some new issue here.  now the pylith did run further until it got
crashed.  Anyone has a clue what does the following error mean?
Thanks a lot!!

Where the error info occurred: (Attached is the detailed run log file).
......
 -- implicit(info)
 -- Creating solution field.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Development Version 2.3.3, Patch 8, Tue Jan 29 00:02:06
CST 2008 HG revision: 4b0f5f032b0655745a4e6a02aa42852564e2854a
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR:
/chandler/home/jlu/scratch1/pylith_workarea/nemesis/trunk/mpinemesis on a
linux-gnu named elsasser by jlu Tue Feb 12 11:11:05 2008
[0]PETSC ERROR: Libraries linked from
/chandler/home/jlu/scratch1/pylith_workarea/petsc-dev/lib
[0]PETSC ERROR: Configure run at Tue Jan 29 15:33:02 2008
[0]PETSC ERROR: Configure options --with-sieve=1 --with-clanguage=C++
--with-shared=1 --download-f-blas-lapack=1 --with-boost=1 --download-boost=1
--with-chaco=1 --download-chaco=1 --with-mpi=1 --download-mpich=1
--with-mpi-shared=1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
file
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0

Jiangning


---
Jiangning Lü
54-521     x3-6389
Geophysics
EAPS, MIT
johnnylu at mit.edu (????
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