[CIG-SHORT] mpi missing error when trying to install nemesis

[Birendra jha]

Hi Brad,

I removed pythia folder from $HOME/src (trying to uninstall pythia as per Leif's email), removed nemesis-dev folders from src and build, checked out nemesis-dev again, configured, ran make and got same errors during make install. 
merlin.UnknownExtra: pythia 0.8.1.10 has no such extra feature 'mpi'

How to install nemesis "properly (with all egg metadata)" as per Leif?

One thing--removing pythia means I get error when trying to import pyre.

Thanks & regards
Birendra

--- On Tue, 10/5/10, Brad Aagaard <baagaard at usgs.gov> wrote:

> From: Brad Aagaard <baagaard at usgs.gov>
> Subject: Re: mpi missing error when trying to install nemesis
> To: cig-short at geodynamics.org, bjha7333 at yahoo.com
> Date: Tuesday, October 5, 2010, 8:35 AM
> On 10/4/10 7:57 PM, Leif Strand
> wrote:
> > Hi Brad,
> >
> > I was able to reproduce this by downloading
> pythia-0.8.1.10.tar.gz,
> > manually installing it, adding it to my PYTHONPATH,
> and then installing
> > 'nemesis'.
> >
> > I'm not sure if this is a bug or not... there should
> be Pythia "egg
> > metadata" installed by "setuptools", but in this
> scenario, it is not.
> >
> > However, if one simply installs 'nemesis' -- without
> manually installing
> > Pythia first -- Pythia is automatically downloaded
> & installed -- and
> > properly (with all egg metadata).
> >
> > --Leif
> >
> >
> > Brad Aagaard wrote:
> >> Leif-
> >>
> >> A PyLith user trying to install from source is
> getting an odd error
> >> when running "make install" for nemesis. Is this
> some sort of
> >> PYTHONPATH issue? A merlin bug?
> >>
> >> Thanks,
> >> Brad
> >>
> >>
> >>
> bjha at ubuntu:~/scratch/build/gcc-4.4.1_64/nemesis-dev$ make
> install
> >> make[1]: Entering directory
> >>
> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
> >> test -z "/home/bjha/tools/gcc-4.4.1_64/bin" ||
> /bin/mkdir -p
> >> "/home/bjha/tools/gcc-4.4.1_64/bin"
> >> /usr/bin/install -c nemesis mpinemesis
> >> '/home/bjha/tools/gcc-4.4.1_64/bin'
> >> make install-data-hook
> >> make[2]: Entering directory
> >>
> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
> >> top_builddir=`CDPATH="${ZSH_VERSION+.}:"
> && cd . && pwd` && \
> >> cd /home/bjha/src/nemesis-dev && \
> >> /usr/bin/python setup.py install_deps -H None -f
> $top_builddir/deps
> >> --prefix=/home/bjha/tools/gcc-4.4.1_64 &&
> \
> >> /usr/bin/python setup.py egg_info -e
> >>
> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages
> >>
> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175:
> >> DeprecationWarning: the sets module is deprecated
> >> from sets import ImmutableSet
> >>
> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/package_index.py:7:
> >> DeprecationWarning: the md5 module is deprecated;
> use hashlib instead
> >> from md5 import md5
> >> running install_deps
> >> Checking .pth file support in
> >>
> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages
> >> /usr/bin/python -E -c pass
> >> running egg_info
> >> writing requirements to
> nemesis.egg-info/requires.txt
> >> writing nemesis.egg-info/PKG-INFO
> >> writing top-level names to
> nemesis.egg-info/top_level.txt
> >> writing dependency_links to
> nemesis.egg-info/dependency_links.txt
> >> writing manifest file
> 'nemesis.egg-info/SOURCES.txt'
> >>
> >> Installed /home/bjha/src/nemesis-dev
> >> Processing dependencies for nemesis==1.0
> >> Traceback (most recent call last):
> >> File "setup.py", line 23, in <module>
> >> url = 'http://www.geodynamics.org/cig/software/packages/cs/pythia/',
> >> File "/usr/lib/python2.6/distutils/core.py", line
> 152, in setup
> >> dist.run_commands()
> >> File "/usr/lib/python2.6/distutils/dist.py", line
> 975, in run_commands
> >> self.run_command(cmd)
> >> File "/usr/lib/python2.6/distutils/dist.py", line
> 995, in run_command
> >> cmd_obj.run()
> >> File
> >>
> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/command/install_deps.py",
> >> line 25, in run
> >> self.install_dependencies()
> >> File
> >>
> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/command/install_deps.py",
> >> line 74, in install_dependencies
> >> self.process_distribution(None, self.dist, not
> self.no_deps)
> >> File
> >>
> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/command/easy_install.py",
> >> line 526, in process_distribution
> >> [requirement], self.local_index,
> self.easy_install
> >> File
> >>
> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py",
> >> line 650, in resolve
> >>
> requirements.extend(dist.requires(req.extras)[::-1])
> >> File
> >>
> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py",
> >> line 2219, in requires
> >> "%s has no such extra feature %r" % (self, ext)
> >> merlin.UnknownExtra: pythia 0.8.1.10 has no such
> extra feature 'mpi'
> >> make[2]: *** [install-data-hook] Error 1
> >> make[2]: Leaving directory
> >>
> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
> >> make[1]: *** [install-data-am] Error 2
> >> make[1]: Leaving directory
> >>
> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
> >> make: *** [install-am] Error 2
> >>
> >
> >
> 
>