[CIG-SHORT] mpi missing error when trying to install nemesis

[Brad Aagaard]

Birendra-

Removing the src/pythia directory did not do anything. You need to 
remove the "installed" pythia directory in

/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/

Brad


On 10/4/10 8:32 PM, Birendra jha wrote:
> Hi Brad,
>
> I removed pythia folder from $HOME/src (trying to uninstall pythia as per Leif's email), removed nemesis-dev folders from src and build, checked out nemesis-dev again, configured, ran make and got same errors during make install.
> merlin.UnknownExtra: pythia 0.8.1.10 has no such extra feature 'mpi'
>
> How to install nemesis "properly (with all egg metadata)" as per Leif?
>
> One thing--removing pythia means I get error when trying to import pyre.
>
> Thanks&  regards
> Birendra
>
> --- On Tue, 10/5/10, Brad Aagaard<baagaard at usgs.gov>  wrote:
>
>> From: Brad Aagaard<baagaard at usgs.gov>
>> Subject: Re: mpi missing error when trying to install nemesis
>> To: cig-short at geodynamics.org, bjha7333 at yahoo.com
>> Date: Tuesday, October 5, 2010, 8:35 AM
>> On 10/4/10 7:57 PM, Leif Strand
>> wrote:
>>> Hi Brad,
>>>
>>> I was able to reproduce this by downloading
>> pythia-0.8.1.10.tar.gz,
>>> manually installing it, adding it to my PYTHONPATH,
>> and then installing
>>> 'nemesis'.
>>>
>>> I'm not sure if this is a bug or not... there should
>> be Pythia "egg
>>> metadata" installed by "setuptools", but in this
>> scenario, it is not.
>>>
>>> However, if one simply installs 'nemesis' -- without
>> manually installing
>>> Pythia first -- Pythia is automatically downloaded
>> &  installed -- and
>>> properly (with all egg metadata).
>>>
>>> --Leif
>>>
>>>
>>> Brad Aagaard wrote:
>>>> Leif-
>>>>
>>>> A PyLith user trying to install from source is
>> getting an odd error
>>>> when running "make install" for nemesis. Is this
>> some sort of
>>>> PYTHONPATH issue? A merlin bug?
>>>>
>>>> Thanks,
>>>> Brad
>>>>
>>>>
>>>>
>> bjha at ubuntu:~/scratch/build/gcc-4.4.1_64/nemesis-dev$ make
>> install
>>>> make[1]: Entering directory
>>>>
>> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
>>>> test -z "/home/bjha/tools/gcc-4.4.1_64/bin" ||
>> /bin/mkdir -p
>>>> "/home/bjha/tools/gcc-4.4.1_64/bin"
>>>> /usr/bin/install -c nemesis mpinemesis
>>>> '/home/bjha/tools/gcc-4.4.1_64/bin'
>>>> make install-data-hook
>>>> make[2]: Entering directory
>>>>
>> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
>>>> top_builddir=`CDPATH="${ZSH_VERSION+.}:"
>> &&  cd .&&  pwd`&&  \
>>>> cd /home/bjha/src/nemesis-dev&&  \
>>>> /usr/bin/python setup.py install_deps -H None -f
>> $top_builddir/deps
>>>> --prefix=/home/bjha/tools/gcc-4.4.1_64&&
>> \
>>>> /usr/bin/python setup.py egg_info -e
>>>>
>> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages
>>>>
>> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175:
>>>> DeprecationWarning: the sets module is deprecated
>>>> from sets import ImmutableSet
>>>>
>> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/package_index.py:7:
>>>> DeprecationWarning: the md5 module is deprecated;
>> use hashlib instead
>>>> from md5 import md5
>>>> running install_deps
>>>> Checking .pth file support in
>>>>
>> /home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages
>>>> /usr/bin/python -E -c pass
>>>> running egg_info
>>>> writing requirements to
>> nemesis.egg-info/requires.txt
>>>> writing nemesis.egg-info/PKG-INFO
>>>> writing top-level names to
>> nemesis.egg-info/top_level.txt
>>>> writing dependency_links to
>> nemesis.egg-info/dependency_links.txt
>>>> writing manifest file
>> 'nemesis.egg-info/SOURCES.txt'
>>>>
>>>> Installed /home/bjha/src/nemesis-dev
>>>> Processing dependencies for nemesis==1.0
>>>> Traceback (most recent call last):
>>>> File "setup.py", line 23, in<module>
>>>> url = 'http://www.geodynamics.org/cig/software/packages/cs/pythia/',
>>>> File "/usr/lib/python2.6/distutils/core.py", line
>> 152, in setup
>>>> dist.run_commands()
>>>> File "/usr/lib/python2.6/distutils/dist.py", line
>> 975, in run_commands
>>>> self.run_command(cmd)
>>>> File "/usr/lib/python2.6/distutils/dist.py", line
>> 995, in run_command
>>>> cmd_obj.run()
>>>> File
>>>>
>> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/command/install_deps.py",
>>>> line 25, in run
>>>> self.install_dependencies()
>>>> File
>>>>
>> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/command/install_deps.py",
>>>> line 74, in install_dependencies
>>>> self.process_distribution(None, self.dist, not
>> self.no_deps)
>>>> File
>>>>
>> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/command/easy_install.py",
>>>> line 526, in process_distribution
>>>> [requirement], self.local_index,
>> self.easy_install
>>>> File
>>>>
>> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py",
>>>> line 650, in resolve
>>>>
>> requirements.extend(dist.requires(req.extras)[::-1])
>>>> File
>>>>
>> "/home/bjha/tools/gcc-4.4.1_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py",
>>>> line 2219, in requires
>>>> "%s has no such extra feature %r" % (self, ext)
>>>> merlin.UnknownExtra: pythia 0.8.1.10 has no such
>> extra feature 'mpi'
>>>> make[2]: *** [install-data-hook] Error 1
>>>> make[2]: Leaving directory
>>>>
>> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
>>>> make[1]: *** [install-data-am] Error 2
>>>> make[1]: Leaving directory
>>>>
>> `/home/bjha/scratch/build/gcc-4.4.1_64/nemesis-dev'
>>>> make: *** [install-am] Error 2
>>>>
>>>
>>>
>>
>>
>
>
>
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