[CIG-SHORT] Trouble Installing Stable Pylith 1.5 -- petscmesh.hh not found

[Jeffrey Thompson]

Hello CIG-Short,

I'm trying to make and install the stable version of Pylith, and I ran into
the error below after issuing the "make" command.  It seems to me that the
main error is that Pylith cannot find the petscmesh.hh file.  I updated
PETSc and spatialdata before Pylith, so I should have the most recent
versions of these programs.  I also tried installing the version Pylith from
the trunk directory, and the same error occured.  I've attached my
config.log file from the 'stable' pylith install.

Thanks in advance,
Jeff Thompson
Seismolab
California Institute of Technology

make[3]: Entering directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'
if /bin/sh ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I.
-I.. -I../include
-I/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.11-py2.5.egg
-I/usr/include/python2.5  -DENABLE_CUBIT
-I/home/jeffremt/tools/proj-4.7.0/gcc-4.1.1_64/include
-I/home/jeffremt/tools/cppunit-1.12.1/gcc-4.1.1_64/include
-I/home/jeffremt/tools/cig/gcc-4.1.1_64/include
-I/home/jeffremt/tools/cig/gcc-4.1.1_64/include/pythia-0.8.1.10
-I/home/jeffremt/tools/netcdf-4.0.1/gcc-4.1.1_64/include  -g -O2 -MT
BoundaryCondition.lo -MD -MP -MF ".deps/BoundaryCondition.Tpo" -c -o
BoundaryCondition.lo `test -f 'bc/BoundaryCondition.cc' || echo
'./'`bc/BoundaryCondition.cc; \
then mv -f ".deps/BoundaryCondition.Tpo" ".deps/BoundaryCondition.Plo"; else
rm -f ".deps/BoundaryCondition.Tpo"; exit 1; fi
mkdir .libs
 g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../include
-I/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.11-py2.5.egg
-I/usr/include/python2.5 -DENABLE_CUBIT
-I/home/jeffremt/tools/proj-4.7.0/gcc-4.1.1_64/include
-I/home/jeffremt/tools/cppunit-1.12.1/gcc-4.1.1_64/include
-I/home/jeffremt/tools/cig/gcc-4.1.1_64/include
-I/home/jeffremt/tools/cig/gcc-4.1.1_64/include/pythia-0.8.1.10
-I/home/jeffremt/tools/netcdf-4.0.1/gcc-4.1.1_64/include -g -O2 -MT
BoundaryCondition.lo -MD -MP -MF .deps/BoundaryCondition.Tpo -c
bc/BoundaryCondition.cc  -fPIC -DPIC -o .libs/BoundaryCondition.o
In file included from bc/BoundaryCondition.cc:23:
../include/pylith/topology/Mesh.hh:33:43: petscmesh.hh: No such file or
directory
In file included from bc/BoundaryCondition.cc:23:
../include/pylith/topology/Mesh.hh:59: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:59: error: ISO C++ forbids declaration of
`IMesh' with no type
../include/pylith/topology/Mesh.hh:59: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:60: error: `SieveMesh' has not been
declared
../include/pylith/topology/Mesh.hh:60: error: ISO C++ forbids declaration of
`real_section_type' with no type
../include/pylith/topology/Mesh.hh:60: error: expected `;' before
"RealSection"
../include/pylith/topology/Mesh.hh:61: error: `SieveMesh' has not been
declared
../include/pylith/topology/Mesh.hh:61: error: ISO C++ forbids declaration of
`int_section_type' with no type
../include/pylith/topology/Mesh.hh:61: error: expected `;' before
"IntSection"
../include/pylith/topology/Mesh.hh:62: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:62: error: ISO C++ forbids declaration of
`IMesh' with no type
../include/pylith/topology/Mesh.hh:62: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:63: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:63: error: ISO C++ forbids declaration of
`RestrictVisitor' with no type
../include/pylith/topology/Mesh.hh:63: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:64: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:64: error: ISO C++ forbids declaration of
`UpdateAddVisitor' with no type
../include/pylith/topology/Mesh.hh:64: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:65: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:65: error: ISO C++ forbids declaration of
`UpdateAllVisitor' with no type
../include/pylith/topology/Mesh.hh:65: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:66: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:66: error: ISO C++ forbids declaration of
`IndicesVisitor' with no type
../include/pylith/topology/Mesh.hh:66: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:82: error: expected `,' or `...' before
'&' token
../include/pylith/topology/Mesh.hh:82: error: ISO C++ forbids declaration of
`MPI_Comm' with no type
../include/pylith/topology/Mesh.hh:100: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:100: error: ISO C++ forbids declaration
of `Obj' with no type
../include/pylith/topology/Mesh.hh:100: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:106: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:106: error: ISO C++ forbids declaration
of `Obj' with no type
../include/pylith/topology/Mesh.hh:106: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:160: error: expected `,' or `...' before
"value"
../include/pylith/topology/Mesh.hh:160: error: ISO C++ forbids declaration
of `MPI_Comm' with no type
../include/pylith/topology/Mesh.hh:166: error: `MPI_Comm' does not name a
type
../include/pylith/topology/Mesh.hh:195: error: `ALE' has not been declared
../include/pylith/topology/Mesh.hh:195: error: ISO C++ forbids declaration
of `Obj' with no type
../include/pylith/topology/Mesh.hh:195: error: expected `;' before '<' token
../include/pylith/topology/Mesh.hh:197: error: `MPI_Comm' does not name a
type
In file included from ../include/pylith/topology/Mesh.hh:208,
                 from bc/BoundaryCondition.cc:23:
../include/pylith/topology/Mesh.icc:25: error: `ALE' has not been declared
../include/pylith/topology/Mesh.icc:25: error: expected initializer before
'<' token
../include/pylith/topology/Mesh.icc:32: error: `ALE' has not been declared
../include/pylith/topology/Mesh.icc:32: error: expected initializer before
'<' token
../include/pylith/topology/Mesh.icc: In member function `void
pylith::topology::Mesh::debug(bool)':
../include/pylith/topology/Mesh.icc:49: error: `_mesh' was not declared in
this scope
../include/pylith/topology/Mesh.icc: In member function `int
pylith::topology::Mesh::dimension() const':
../include/pylith/topology/Mesh.icc:64: error: `_mesh' was not declared in
this scope
../include/pylith/topology/Mesh.icc: In member function `int
pylith::topology::Mesh::coneSize() const':
../include/pylith/topology/Mesh.icc:71: error: `_mesh' was not declared in
this scope
../include/pylith/topology/Mesh.icc: In member function `int
pylith::topology::Mesh::numVertices() const':
../include/pylith/topology/Mesh.icc:78: error: `_mesh' was not declared in
this scope
../include/pylith/topology/Mesh.icc: In member function `int
pylith::topology::Mesh::numCells() const':
../include/pylith/topology/Mesh.icc:85: error: `_mesh' was not declared in
this scope
../include/pylith/topology/Mesh.icc: At global scope:
../include/pylith/topology/Mesh.icc:91: error: expected `,' or `...' before
"value"
../include/pylith/topology/Mesh.icc:91: error: ISO C++ forbids declaration
of `MPI_Comm' with no type
../include/pylith/topology/Mesh.icc: In member function `void
pylith::topology::Mesh::comm(int)':
../include/pylith/topology/Mesh.icc:92: error: `_comm' was not declared in
this scope
../include/pylith/topology/Mesh.icc:92: error: `value' was not declared in
this scope
../include/pylith/topology/Mesh.icc: At global scope:
../include/pylith/topology/Mesh.icc:97: error: `MPI_Comm' does not name a
type
../include/pylith/topology/Mesh.icc: In member function `void
pylith::topology::Mesh::view(const char*) const':
../include/pylith/topology/Mesh.icc:106: error: `_mesh' was not declared in
this scope
bc/BoundaryCondition.cc: In member function `virtual void
pylith::bc::BoundaryCondition::verifyConfiguration(const
pylith::topology::Mesh&) const':
bc/BoundaryCondition.cc:53: error: `ALE' has not been declared
bc/BoundaryCondition.cc:53: error: expected initializer before '<' token
bc/BoundaryCondition.cc:54: error: `sieveMesh' was not declared in this
scope
bc/BoundaryCondition.cc:57: error: aggregate `std::ostringstream msg' has
incomplete type and cannot be defined
make[3]: *** [BoundaryCondition.lo] Error 1
make[3]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable'
make: *** [all] Error 2
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