[CIG-SHORT] "make check" error upon updating PyLith

Tue Mar 29 16:39:10 PDT 2011

Hi Brad,

I've gone through and checked my environment variables and removed the old
version of FIAT that I had on my system.  The same issue I had earlier
remains.  I've attached my makeCheck.log file, and I've made sure that it
accurately represents the error that I'm receiving during "make check."

Just to be sure I've implimented the new version of FIAT correctly, I'll
summarize where I have FIAT located on my system and how my environment
variables are setup.  I have FIAT (version 0.9.9) installed in both my
tools/petsc-dev/linux_gcc-4.1.1_64_opt/lib/python2.5/site-packages/FIAT and
my tools/cig/gcc-4.1.1_64/lib/python2.5/site-packes/FIAT directories.  I've
found that I need FIAT in both locations otherwise either PETSc won't
configure (or will download it if instructed to) or PyLith's configure
cannot locate FIAT.  My environment variables for FIAT are:

FIAT_DIR=${PETSC_DIR}/linux_${TOOLS_FORMAT}_opt/
export
PYTHONPATH=${PYTHONPATH}:${FIAT_DIR}/lib/python${PYTHON_VERSION}/site-packages

where PETSC_DIR points to tools/petsc-dev and TOOLS_FORMAT returns
gcc-4.1.1_64.  Please let me know if I have any mistakes in how I've updated
FIAT.

Thanks,
Jeff

On Tue, Mar 29, 2011 at 2:32 PM, Brad Aagaard <baagaard at usgs.gov> wrote:

> Jeff-
>
> Your makeCheck.log file does not match the information you included in your
> email message. The makeCheck.log shows all libtests passing and some pytests
> related to FIAT failing, so I can't tell which tests are really failing and
> which are passing. All of the unit tests pass on my machine and on the
> buildbots, so I suspect your environment is not being setup consistently.
>
> I recommend checking your environment variables carefully to make sure you
> have just one version of PyLith in your path and that the values are
> consistent with those used when you configured PyLith. In other words, make
> sure PATH, LD_LIBRARY_PATH (or DYLD_LIBRARY_PATH on darwin), and PYTHONPATH
> are up-to-date and consistent. You should also make sure any old FIAT
> versions are removed (remove the FIAT directory from
> $PREFIX/lib/python2.5/site-packages).
>
> Brad
>
>
>
> On 03/29/2011 01:29 PM, Jeffrey Thompson wrote:
>
>> Hi CIG-Short,
>>
>> I'm trying to update my version of PyLith, and I ran into a problem with
>> feassemble during the make check.  I've attached my PyLith configuration
>> logs, as well as the make and makeCheck logs to this email.  Below, I've
>> also copied the text dumped by the "make check" into the terminal.  I
>> updated petsc-dev (using it to download scientificpython and fiat) as well
>> as PyLith while trying to update PyLith.
>>
>> Thanks for the help,
>> Jeff Thompson
>> Caltech Seismolab
>>
>>
>> creating testfeassemble
>> make[5]: Leaving directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests/libtests/feassemble'
>> make  check-TESTS
>> make[5]: Entering directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests/libtests/feassemble'
>> pylith::feassemble::TestCellGeometry::testOrient0D : OK
>> pylith::feassemble::TestCellGeometry::testOrient1D : OK
>> pylith::feassemble::TestCellGeometry::testOrient2D : OK
>> pylith::feassemble::TestGeometryPoint1D::testConstructor : OK
>> pylith::feassemble::TestGeometryPoint1D::testClone : OK
>> pylith::feassemble::TestGeometryPoint1D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryPoint1D::testCellDim : OK
>> pylith::feassemble::TestGeometryPoint1D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryPoint1D::testNumCorners : OK
>> pylith::feassemble::TestGeometryPoint1D::testOrientFn : OK
>> pylith::feassemble::TestGeometryPoint1D::testJacobian : OK
>> pylith::feassemble::TestGeometryPoint2D::testConstructor : OK
>> pylith::feassemble::TestGeometryPoint2D::testClone : OK
>> pylith::feassemble::TestGeometryPoint2D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryPoint2D::testCellDim : OK
>> pylith::feassemble::TestGeometryPoint2D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryPoint2D::testNumCorners : OK
>> pylith::feassemble::TestGeometryPoint2D::testOrientFn : OK
>> pylith::feassemble::TestGeometryPoint2D::testJacobian : OK
>> pylith::feassemble::TestGeometryPoint3D::testConstructor : OK
>> pylith::feassemble::TestGeometryPoint3D::testClone : OK
>> pylith::feassemble::TestGeometryPoint3D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryPoint3D::testCellDim : OK
>> pylith::feassemble::TestGeometryPoint3D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryPoint3D::testNumCorners : OK
>> pylith::feassemble::TestGeometryPoint3D::testOrientFn : OK
>> pylith::feassemble::TestGeometryPoint3D::testJacobian : OK
>> pylith::feassemble::TestGeometryLine1D::testConstructor : OK
>> pylith::feassemble::TestGeometryLine1D::testClone : OK
>> pylith::feassemble::TestGeometryLine1D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryLine1D::testCellDim : OK
>> pylith::feassemble::TestGeometryLine1D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryLine1D::testNumCorners : OK
>> pylith::feassemble::TestGeometryLine1D::testOrientFn : OK
>> pylith::feassemble::TestGeometryLine1D::testJacobian : OK
>> pylith::feassemble::TestGeometryLine2D::testConstructor : OK
>> pylith::feassemble::TestGeometryLine2D::testClone : OK
>> pylith::feassemble::TestGeometryLine2D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryLine2D::testCellDim : OK
>> pylith::feassemble::TestGeometryLine2D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryLine2D::testNumCorners : OK
>> pylith::feassemble::TestGeometryLine2D::testOrientFn : OK
>> pylith::feassemble::TestGeometryLine2D::testJacobian : OK
>> pylith::feassemble::TestGeometryLine3D::testConstructor : OK
>> pylith::feassemble::TestGeometryLine3D::testClone : OK
>> pylith::feassemble::TestGeometryLine3D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryLine3D::testCellDim : OK
>> pylith::feassemble::TestGeometryLine3D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryLine3D::testNumCorners : OK
>> pylith::feassemble::TestGeometryLine3D::testOrientFn : OK
>> pylith::feassemble::TestGeometryLine3D::testJacobian : OK
>> pylith::feassemble::TestGeometryTri2D::testConstructor : OK
>> pylith::feassemble::TestGeometryTri2D::testClone : OK
>> pylith::feassemble::TestGeometryTri2D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryTri2D::testCellDim : OK
>> pylith::feassemble::TestGeometryTri2D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryTri2D::testNumCorners : OK
>> pylith::feassemble::TestGeometryTri2D::testOrientFn : OK
>> pylith::feassemble::TestGeometryTri2D::testJacobian : OK
>> pylith::feassemble::TestGeometryTri3D::testConstructor : OK
>> pylith::feassemble::TestGeometryTri3D::testClone : OK
>> pylith::feassemble::TestGeometryTri3D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryTri3D::testCellDim : OK
>> pylith::feassemble::TestGeometryTri3D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryTri3D::testNumCorners : OK
>> pylith::feassemble::TestGeometryTri3D::testOrientFn : OK
>> pylith::feassemble::TestGeometryTri3D::testJacobian : OK
>> pylith::feassemble::TestGeometryQuad2D::testConstructor : OK
>> pylith::feassemble::TestGeometryQuad2D::testClone : OK
>> pylith::feassemble::TestGeometryQuad2D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryQuad2D::testCellDim : OK
>> pylith::feassemble::TestGeometryQuad2D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryQuad2D::testNumCorners : OK
>> pylith::feassemble::TestGeometryQuad2D::testOrientFn : OK
>> pylith::feassemble::TestGeometryQuad2D::testJacobian : OK
>> pylith::feassemble::TestGeometryQuad3D::testConstructor : OK
>> pylith::feassemble::TestGeometryQuad3D::testClone : OK
>> pylith::feassemble::TestGeometryQuad3D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryQuad3D::testCellDim : OK
>> pylith::feassemble::TestGeometryQuad3D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryQuad3D::testNumCorners : OK
>> pylith::feassemble::TestGeometryQuad3D::testOrientFn : OK
>> pylith::feassemble::TestGeometryQuad3D::testJacobian : OK
>> pylith::feassemble::TestGeometryTet3D::testConstructor : OK
>> pylith::feassemble::TestGeometryTet3D::testClone : OK
>> pylith::feassemble::TestGeometryTet3D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryTet3D::testCellDim : OK
>> pylith::feassemble::TestGeometryTet3D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryTet3D::testNumCorners : OK
>> pylith::feassemble::TestGeometryTet3D::testOrientFn : OK
>> pylith::feassemble::TestGeometryTet3D::testJacobian : OK
>> pylith::feassemble::TestGeometryHex3D::testConstructor : OK
>> pylith::feassemble::TestGeometryHex3D::testClone : OK
>> pylith::feassemble::TestGeometryHex3D::testGeomLowerDim : OK
>> pylith::feassemble::TestGeometryHex3D::testCellDim : OK
>> pylith::feassemble::TestGeometryHex3D::testSpaceDim : OK
>> pylith::feassemble::TestGeometryHex3D::testNumCorners : OK
>> pylith::feassemble::TestGeometryHex3D::testOrientFn : OK
>> pylith::feassemble::TestGeometryHex3D::testJacobian : OK
>> pylith::feassemble::TestQuadratureRefCell::testConstructor : OK
>> pylith::feassemble::TestQuadratureRefCell::testMinJacobian : OK
>> pylith::feassemble::TestQuadratureRefCell::testRefGeometry : OK
>> pylith::feassemble::TestQuadratureRefCell::testInitialize : OK
>> pylith::feassemble::TestQuadratureEngine::testCopyConstructor : OK
>> pylith::feassemble::TestQuadratureEngine::testInitialize : OK
>> pylith::feassemble::TestQuadrature0D::testConstructor : OK
>> pylith::feassemble::TestQuadrature0D::testPoint : OK
>> pylith::feassemble::TestQuadrature1D::testConstructor : OK
>> pylith::feassemble::TestQuadrature1D::testLinear : OK
>> pylith::feassemble::TestQuadrature1D::testQuadratic : OK
>> pylith::feassemble::TestQuadrature1Din2D::testConstructor : OK
>> pylith::feassemble::TestQuadrature1Din2D::testLinear : OK
>> pylith::feassemble::TestQuadrature1Din2D::testQuadratic : OK
>> pylith::feassemble::TestQuadrature1Din3D::testConstructor : OK
>> pylith::feassemble::TestQuadrature1Din3D::testLinear : OK
>> pylith::feassemble::TestQuadrature1Din3D::testQuadratic : OK
>> pylith::feassemble::TestQuadrature2D::testConstructor : OK
>> pylith::feassemble::TestQuadrature2D::testLinear : OK
>> pylith::feassemble::TestQuadrature2D::testQuadratic : OK
>> pylith::feassemble::TestQuadrature2Din3D::testConstructor : OK
>> pylith::feassemble::TestQuadrature2Din3D::testLinearXYZ : OK
>> pylith::feassemble::TestQuadrature2Din3D::testLinearXY : OK
>> pylith::feassemble::TestQuadrature2Din3D::testLinearYZ : OK
>> pylith::feassemble::TestQuadrature2Din3D::testLinearXZ : OK
>> pylith::feassemble::TestQuadrature2Din3D::testQuadratic : OK
>> pylith::feassemble::TestQuadrature3D::testConstructor : OK
>> pylith::feassemble::TestQuadrature3D::testLinear : OK
>> pylith::feassemble::TestQuadrature3D::testQuadratic : OK
>> pylith::feassemble::TestQuadrature::testCopyConstructor : OK
>> pylith::feassemble::TestQuadrature::testCheckConditioning : OK
>> pylith::feassemble::TestQuadrature::testEngineAccessors : OK
>> pylith::feassemble::TestQuadrature::testComputeGeometry : OK
>> pylith::feassemble::TestQuadrature::testComputeGeometryCell : OK
>> pylith::feassemble::TestIntegrator::testTimeStep : OK
>> pylith::feassemble::TestIntegrator::testStableTimeStep : OK
>> pylith::feassemble::TestIntegrator::testIsJacobianSymmetric : OK
>> pylith::feassemble::TestIntegrator::testQuadrature : OK
>> pylith::feassemble::TestIntegrator::testNormalizer : OK
>> pylith::feassemble::TestIntegrator::testGravityField : OK
>> pylith::feassemble::TestIntegrator::testInitCellVector : OK
>> pylith::feassemble::TestIntegrator::testResetCellVector : OK
>> pylith::feassemble::TestIntegrator::testInitCellMatrix : OK
>> pylith::feassemble::TestIntegrator::testResetCellMatrix : OK
>> pylith::feassemble::TestIntegrator::testLumpCellMatrix : OK
>> pylith::feassemble::TestIntegrator::testSplitField : OK
>> pylith::feassemble::TestIntegratorElasticity::testCalcTotalStrain1D : OK
>> pylith::feassemble::TestIntegratorElasticity::testCalcTotalStrain2D : OK
>> pylith::feassemble::TestIntegratorElasticity::testCalcTotalStrain3D : OK
>> pylith::feassemble::TestElasticityExplicit::testConstructor : OK
>> pylith::feassemble::TestElasticityExplicit::testTimeStep : OK
>> pylith::feassemble::TestElasticityExplicit::testMaterial : OK
>> pylith::feassemble::TestElasticityExplicit::testNeedNewJacobian : OK
>> pylith::feassemble::TestElasticityExplicit::testUseSolnIncr : OK
>> pylith::feassemble::TestElasticityExplicit1DLinear::testInitialize : OK
>> pylith::feassemble::TestElasticityExplicit1DLinear::testIntegrateResidual
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicit1DLinear::testIntegrateResidualLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit1DLinear::testIntegrateJacobian
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicit1DLinear::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit1DLinear::testUpdateStateVars :
>> OK
>> pylith::feassemble::TestElasticityExplicit1DLinear::testStableTimeStep :
>> OK
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testInitialize : OK
>>
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testUpdateStateVars
>> :
>> OK
>> pylith::feassemble::TestElasticityExplicit1DQuadratic::testStableTimeStep
>> :
>> OK
>> pylith::feassemble::TestElasticityExplicit2DLinear::testInitialize : OK
>> pylith::feassemble::TestElasticityExplicit2DLinear::testIntegrateResidual
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicit2DLinear::testIntegrateResidualLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit2DLinear::testIntegrateJacobian
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicit2DLinear::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit2DLinear::testUpdateStateVars :
>> OK
>> pylith::feassemble::TestElasticityExplicit2DLinear::testStableTimeStep :
>> OK
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testInitialize : OK
>>
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testUpdateStateVars
>> :
>> OK
>> pylith::feassemble::TestElasticityExplicit2DQuadratic::testStableTimeStep
>> :
>> OK
>> pylith::feassemble::TestElasticityExplicit3DLinear::testInitialize : OK
>> pylith::feassemble::TestElasticityExplicit3DLinear::testIntegrateResidual
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicit3DLinear::testIntegrateResidualLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit3DLinear::testIntegrateJacobian
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicit3DLinear::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit3DLinear::testUpdateStateVars :
>> OK
>> pylith::feassemble::TestElasticityExplicit3DLinear::testStableTimeStep :
>> OK
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testInitialize : OK
>>
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testUpdateStateVars
>> :
>> OK
>> pylith::feassemble::TestElasticityExplicit3DQuadratic::testStableTimeStep
>> :
>> OK
>> pylith::feassemble::TestElasticityExplicitGrav1DLinear::testInitialize :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DLinear::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DLinear::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DLinear::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DLinear::testIntegrateJacobianLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DLinear::testUpdateStateVars
>> : OK
>> pylith::feassemble::TestElasticityExplicitGrav1DQuadratic::testInitialize
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DQuadratic::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DQuadratic::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DQuadratic::testIntegrateJacobianLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav1DQuadratic::testUpdateStateVars
>> : OK
>> pylith::feassemble::TestElasticityExplicitGrav2DLinear::testInitialize :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DLinear::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DLinear::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DLinear::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DLinear::testIntegrateJacobianLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DLinear::testUpdateStateVars
>> : OK
>> pylith::feassemble::TestElasticityExplicitGrav2DQuadratic::testInitialize
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DQuadratic::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DQuadratic::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DQuadratic::testIntegrateJacobianLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav2DQuadratic::testUpdateStateVars
>> : OK
>> pylith::feassemble::TestElasticityExplicitGrav3DLinear::testInitialize :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DLinear::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DLinear::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DLinear::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DLinear::testIntegrateJacobianLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DLinear::testUpdateStateVars
>> : OK
>> pylith::feassemble::TestElasticityExplicitGrav3DQuadratic::testInitialize
>> :
>> OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DQuadratic::testIntegrateResidualLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DQuadratic::testIntegrateJacobian
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DQuadratic::testIntegrateJacobianLumped
>> : OK
>>
>> pylith::feassemble::TestElasticityExplicitGrav3DQuadratic::testUpdateStateVars
>> : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testConstructor : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testTimeStep : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testMaterial : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testNeedNewJacobian : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testUseSolnIncr : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testInitialize : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testIntegrateResidual : OK
>>
>> pylith::feassemble::TestElasticityExplicitTri3::testIntegrateResidualLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testIntegrateJacobian : OK
>>
>> pylith::feassemble::TestElasticityExplicitTri3::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testUpdateStateVars : OK
>> pylith::feassemble::TestElasticityExplicitTri3::testStableTimeStep : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testConstructor : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testTimeStep : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testMaterial : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testNeedNewJacobian : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testUseSolnIncr : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testInitialize : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testIntegrateResidual : OK
>>
>> pylith::feassemble::TestElasticityExplicitTet4::testIntegrateResidualLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testIntegrateJacobian : OK
>>
>> pylith::feassemble::TestElasticityExplicitTet4::testIntegrateJacobianLumped
>> : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testUpdateStateVars : OK
>> pylith::feassemble::TestElasticityExplicitTet4::testStableTimeStep : OK
>> pylith::feassemble::TestElasticityImplicit::testConstructor : OK
>> pylith::feassemble::TestElasticityImplicit::testTimeStep : OK
>> pylith::feassemble::TestElasticityImplicit::testMaterial : OK
>> pylith::feassemble::TestElasticityImplicit::testNeedNewJacobian : OK
>> pylith::feassemble::TestElasticityImplicit::testUseSolnIncr : OK
>> pylith::feassemble::TestElasticityImplicit1DLinear::testInitialize : OK
>> pylith::feassemble::TestElasticityImplicit1DLinear::testIntegrateResidual
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit1DLinear::testIntegrateJacobian
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit1DLinear::testUpdateStateVars :
>> OK
>> pylith::feassemble::TestElasticityImplicit1DLinear::testStableTimeStep :
>> OK
>> pylith::feassemble::TestElasticityImplicit1DQuadratic::testInitialize : OK
>>
>> pylith::feassemble::TestElasticityImplicit1DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityImplicit1DQuadratic::testIntegrateJacobian
>> : OK
>> pylith::feassemble::TestElasticityImplicit1DQuadratic::testUpdateStateVars
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit1DQuadratic::testStableTimeStep
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit2DLinear::testInitialize : OK
>> pylith::feassemble::TestElasticityImplicit2DLinear::testIntegrateResidual
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit2DLinear::testIntegrateJacobian
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit2DLinear::testUpdateStateVars :
>> OK
>> pylith::feassemble::TestElasticityImplicit2DLinear::testStableTimeStep :
>> OK
>> pylith::feassemble::TestElasticityImplicit2DQuadratic::testInitialize : OK
>>
>> pylith::feassemble::TestElasticityImplicit2DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityImplicit2DQuadratic::testIntegrateJacobian
>> : OK
>> pylith::feassemble::TestElasticityImplicit2DQuadratic::testUpdateStateVars
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit2DQuadratic::testStableTimeStep
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit3DLinear::testInitialize : OK
>> pylith::feassemble::TestElasticityImplicit3DLinear::testIntegrateResidual
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit3DLinear::testIntegrateJacobian
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit3DLinear::testUpdateStateVars :
>> OK
>> pylith::feassemble::TestElasticityImplicit3DLinear::testStableTimeStep :
>> OK
>> pylith::feassemble::TestElasticityImplicit3DQuadratic::testInitialize : OK
>>
>> pylith::feassemble::TestElasticityImplicit3DQuadratic::testIntegrateResidual
>> : OK
>>
>> pylith::feassemble::TestElasticityImplicit3DQuadratic::testIntegrateJacobian
>> : OK
>> pylith::feassemble::TestElasticityImplicit3DQuadratic::testUpdateStateVars
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicit3DQuadratic::testStableTimeStep
>> :
>> OK
>> pylith::feassemble::TestElasticityImplicitGrav1DLinear::testInitialize :
>> OK
>>
>> pylith::feassemble::TestElasticityImplicitGrav1DLinear::testIntegrateResidual[0]PETSC
>> ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
>> probably memory access out of range
>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [0]PETSC ERROR: or see
>>
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html#valgrind[0]PETSCERROR
>> :
>> or try
>> http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
>> corruption errors
>> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and
>> run
>> [0]PETSC ERROR: to get more information on the crash.
>> [0]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [0]PETSC ERROR: Signal received!
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Development HG revision:
>> cf735cc08903cfb8eb748b1c44ea97d1cb4d7b9b  HG Date: Mon Mar 28 12:42:26
>> 2011
>> -0500
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR:
>>
>> /home/jeffremt/tools/cig/v1.5-stable/unittests/libtests/feassemble/.libs/lt-testfeassemble
>> on a linux_gcc named jokull.gps.caltech.edu by jeffremt Tue Mar 29
>> 12:03:24
>> 2011
>> [0]PETSC ERROR: Libraries linked from
>> /home/jeffremt/tools/petsc-dev/linux_gcc-4.1.1_64_opt/lib
>> [0]PETSC ERROR: Configure run at Tue Mar 29 10:37:49 2011
>> [0]PETSC ERROR: Configure options --PETSC_ARCH=linux_gcc-4.1.1_64_opt
>> --with-debugging=0 --with-clanguage=cxx --with-mpi-compilers=0
>> --with-gnu-compilers=1 --with-shared-libraries=1 --with-dynamic-loading=1
>> --with-64-bit-points=1 --with-large-file-io=1 --cc=gcc --cxx=g++
>> --fc=gfortran --with-mpi-dir=/home/jeffremt/tools/mpich-1.2.1/gcc-4.1.1_64
>> --with-mpi-shared=0 --with-lgrind=0 --with-c2html=0 --with-chaco=1
>> --download-chaco=1 --with-parmetis=1
>> --with-parmetis-dir=~/tools/ParMetis-3.1.1/gcc-4.1.1_64
>> --with-f-blas-lapack=1 --download-f-blas-lapack=1 --with-sieve=1
>> --with-boost=1 --download-boost=1 --download-fiat=1
>> --with-scientificpython=1
>>
>> --with-scientificpython-dir=/home/jeffremt/tools/petsc-dev/linux_gcc-4.1.1_64_opt
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: User provided function() line 0 in unknown directory
>> unknown
>> file
>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>> FAIL: testfeassemble
>> ==========================================
>> 1 of 1 tests failed
>> Please report to cig-short at geodynamics.org
>> ==========================================
>> make[5]: *** [check-TESTS] Error 1
>> make[5]: Leaving directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests/libtests/feassemble'
>> make[4]: *** [check-am] Error 2
>> make[4]: Leaving directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests/libtests/feassemble'
>> make[3]: *** [check-recursive] Error 1
>> make[3]: Leaving directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests/libtests/feassemble'
>> make[2]: *** [check-recursive] Error 1
>> make[2]: Leaving directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests/libtests'
>> make[1]: *** [check-recursive] Error 1
>> make[1]: Leaving directory
>> `/home/jeffremt/tools/cig/v1.5-stable/unittests'
>> make: *** [check-recursive] Error 1
>>
>>
>>
>>
>> _______________________________________________
>> CIG-SHORT mailing list
>> CIG-SHORT at geodynamics.org
>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>
>
>
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