[CIG-SHORT] error compiling pylith 1.6.2

[Matthew Knepley]

On Mon, Nov 28, 2011 at 3:53 PM, Naveed Near-Ansari <naveed at caltech.edu>wrote:

> I was attempting to build pylith on a new system and have run into an
> error during the tests.  The message said to report it here.
>

OpenMPI is perverse. Its shared libraries must be in your LD_LIBRARY_PATH.

  Matt


> Naveed
>
> make[6]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests/utils'
> make[5]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests/utils'
> make[5]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'
> make[5]: Nothing to be done for `check-am'.
> make[5]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'
> make[4]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'
> Making check in pytests
> make[4]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests'
> Making check in bc
> make[5]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
> Making check in data
> make[6]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
> if [ "X../../../../../pylith-1.6.2" != "X../../../.." ]; then for f in
> tri3_disp.spatialdb tri3_vel.spatialdb tri3_tractions.spatialdb
> tri3.mesh elasticplanestrain.spatialdb; do /bin/sh
> /root/pylith-installer-1.6.2-0/pylith-1.6.2/aux-config/install-sh -c -m
> 644 ../../../../../pylith-1.6.2/unittests/pytests/bc/data/$f
> ../../../../unittests/pytests/bc/data; done; fi
> make  check-am
> make[7]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
> make[7]: Nothing to be done for `check-am'.
> make[7]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
> make[6]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
> make[6]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
> make  testbc.py
> make[7]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
> make[7]: Nothing to be done for
> `../../../../pylith-1.6.2/unittests/pytests/bc/testbc.py'.
> make[7]: Leaving directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
> make  check-TESTS
> make[7]: Entering directory
> `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
>
> /opt/pylith-1.6.2/lib/python2.4/site-packages/pythia-0.8.1.12-py2.4.egg/pyre/inventory/odb/Curator.py:200:
> UserWarning: Module pkg_resources was already imported from
>
> /opt/pylith-1.6.2/lib/python2.4/site-packages/setuptools-0.6c9-py2.4.egg/pkg_resources.pyc,
> but /opt/pylith-1.6.2/lib/python2.4/site-packages/merlin-1.7.egg is
> being added to sys.path
>  from pkg_resources import resource_listdir, resource_isdir,
> resource_exists, resource_filename, Requirement
>
> /opt/pylith-1.6.2/lib/python2.4/site-packages/pythia-0.8.1.12-py2.4.egg/pyre/inventory/odb/Curator.py:200:
> UserWarning: Module site was already imported from
> /usr/lib64/python2.4/site.pyc, but
> /opt/pylith-1.6.2/lib/python2.4/site-packages/merlin-1.7.egg is being
> added to sys.path
>  from pkg_resources import resource_listdir, resource_isdir,
> resource_exists, resource_filename, Requirement
> /usr/bin/python: symbol lookup error:
> /opt/mpi/gcc/openmpi-1.4.3/lib64/openmpi/mca_paffinity_linux.so:
> undefined symbol: mca_base_param_reg_int
> FAIL: testbc.py
> ==========================================
> 1 of 1 test failed
> Please report to cig-short at geodynamics.org
>
>
>
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>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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