[CIG-SHORT] error compiling pylith 1.6.2

[Naveed Near-Ansari]

Thanks.  any other thoughts?  I had that set already.  I ran a make
clean and tried again.  LD_LIBRARY_PATH is as follows:

/opt/pylith-1.6.2/lib:/opt/pylith-1.6.2/lib64:/opt/mpi/gcc/openmpi-1.4.3/lib64/openmpi:/opt/pylith-1.6.2/lib:/opt/pylith-1.6.2/lib64:/opt/hdf5/lib:/opt/netcdf4/lib:/opt/ncl/lib:/opt/pylith-1.6.2/lib:/opt/pylith-1.6.2/lib64:/opt/mpi/gcc/openmpi-1.4.3/lib64:/usr/lib:/usr/lib64


On 11/28/2011 02:06 PM, Matthew Knepley wrote:
> On Mon, Nov 28, 2011 at 3:53 PM, Naveed Near-Ansari
> <naveed at caltech.edu <mailto:naveed at caltech.edu>> wrote:
>
>     I was attempting to build pylith on a new system and have run into an
>     error during the tests.  The message said to report it here.
>
>
> OpenMPI is perverse. Its shared libraries must be in your LD_LIBRARY_PATH.
>
>   Matt
>  
>
>     Naveed
>
>     make[6]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests/utils'
>     make[5]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests/utils'
>     make[5]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'
>     make[5]: Nothing to be done for `check-am'.
>     make[5]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'
>     make[4]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/libtests'
>     Making check in pytests
>     make[4]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests'
>     Making check in bc
>     make[5]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
>     Making check in data
>     make[6]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
>     if [ "X../../../../../pylith-1.6.2" != "X../../../.." ]; then for f in
>     tri3_disp.spatialdb tri3_vel.spatialdb tri3_tractions.spatialdb
>     tri3.mesh elasticplanestrain.spatialdb; do /bin/sh
>     /root/pylith-installer-1.6.2-0/pylith-1.6.2/aux-config/install-sh
>     -c -m
>     644 ../../../../../pylith-1.6.2/unittests/pytests/bc/data/$f
>     ../../../../unittests/pytests/bc/data; done; fi
>     make  check-am
>     make[7]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
>     make[7]: Nothing to be done for `check-am'.
>     make[7]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
>     make[6]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc/data'
>     make[6]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
>     make  testbc.py
>     make[7]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
>     make[7]: Nothing to be done for
>     `../../../../pylith-1.6.2/unittests/pytests/bc/testbc.py'.
>     make[7]: Leaving directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
>     make  check-TESTS
>     make[7]: Entering directory
>     `/root/pylith-installer-1.6.2-0/pylith-build/unittests/pytests/bc'
>     /opt/pylith-1.6.2/lib/python2.4/site-packages/pythia-0.8.1.12-py2.4.egg/pyre/inventory/odb/Curator.py:200:
>     UserWarning: Module pkg_resources was already imported from
>     /opt/pylith-1.6.2/lib/python2.4/site-packages/setuptools-0.6c9-py2.4.egg/pkg_resources.pyc,
>     but /opt/pylith-1.6.2/lib/python2.4/site-packages/merlin-1.7.egg is
>     being added to sys.path
>      from pkg_resources import resource_listdir, resource_isdir,
>     resource_exists, resource_filename, Requirement
>     /opt/pylith-1.6.2/lib/python2.4/site-packages/pythia-0.8.1.12-py2.4.egg/pyre/inventory/odb/Curator.py:200:
>     UserWarning: Module site was already imported from
>     /usr/lib64/python2.4/site.pyc, but
>     /opt/pylith-1.6.2/lib/python2.4/site-packages/merlin-1.7.egg is being
>     added to sys.path
>      from pkg_resources import resource_listdir, resource_isdir,
>     resource_exists, resource_filename, Requirement
>     /usr/bin/python: symbol lookup error:
>     /opt/mpi/gcc/openmpi-1.4.3/lib64/openmpi/mca_paffinity_linux.so:
>     undefined symbol: mca_base_param_reg_int
>     FAIL: testbc.py
>     ==========================================
>     1 of 1 test failed
>     Please report to cig-short at geodynamics.org
>     <mailto:cig-short at geodynamics.org>
>
>
>
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>
>
>
> -- 
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which
> their experiments lead.
> -- Norbert Wiener
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