[CIG-SHORT] error message

[Brad Aagaard]

Luigi,

Is this your own simulation or one of the examples? If it is one of your 
own simulations, there is likely an error in your input. Please send a 
log file with all of the output (i.e., send the log from from running 
"pylith mysim.cfg >& log").

Brad


On 10/24/2011 10:49 AM, luigi vadacca wrote:
> Dear all,
>
> I installed pylith-installer.1.6.1-0.tgz [2011-07-15]. When I run a
> job, I have the following error message.
> How can I fix this?
> Thanks
> Luigi
>
> vadacca at calamaro ATF_modeling2_2D_estrusa]$ Traceback (most recent call last):
>    File "/home/vadacca/pylith/lib/python2.6/site-packages/pylith/apps/PetscApplication.py",
> line 75, in onComputeNodes
>      self.main(*args, **kwds)
>    File "/home/vadacca/pylith/lib/python2.6/site-packages/pylith/apps/PyLithApp.py",
> line 112, in main
>      self.problem.run(self)
>    File "/home/vadacca/pylith/lib/python2.6/site-packages/pylith/problems/TimeDependent.py",
> line 142, in run
>      self.formulation.step(t, dt)
>    File "/home/vadacca/pylith/lib/python2.6/site-packages/pylith/problems/Implicit.py",
> line 232, in step
>      self.solver.solve(dispIncr, self.jacobian, residual)
>    File "/home/vadacca/pylith/lib/python2.6/site-packages/pylith/problems/problems.py",
> line 179, in solve
>      def solve(self, *args): return _problems.SolverNonlinear_solve(self, *args)
> RuntimeError: St9bad_alloc
> --------------------------------------------------------------------------
> MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
> with errorcode -1.
>
> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
> You may or may not see output from other processes, depending on
> exactly when Open MPI kills them.
> --------------------------------------------------------------------------
> --------------------------------------------------------------------------
> mpirun has exited due to process rank 0 with PID 2626 on
> node calamaro exiting without calling "finalize". This may
> have caused other processes in the application to be
> terminated by signals sent by mpirun (as reported here).
> --------------------------------------------------------------------------
> /home/vadacca/pylith/bin/nemesis: mpirun: exit 255
> /home/vadacca/pylith/bin/pylith: /home/vadacca/pylith/bin/nemesis: exit 1
>
>
> --
> Luigi Vadacca
> PhD student
> Istituto Nazionale di Geofisica e Vulcanologia
> via di Vigna Murata, 605 - 00143 Rome, Italy
> phone: +39 06 51860751
> skype:  luigigeo25
> email: luigi.vadacca at ingv.it
> _______________________________________________
> CIG-SHORT mailing list
> CIG-SHORT at geodynamics.org
> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>