[CIG-SHORT] Pylith Install Error

Tue Aug 21 09:59:37 PDT 2012

here is both config.log, from the nemeis and the global one. are there
other config files relevant?

Regards

2012/8/21 Brad Aagaard <baagaard at usgs.gov>

> As Matt noted, we need the config.log from the configure of nemesis to
> know for sure what is going wrong.
>
> I can say that there is a build issue with merlin (one of the Python
> packages that we use) and Python version 2.7 and later. Merlin is
> installed during "downloading missing Python dependencies". If merlin is
> already installed, then an infinite loop can be encountered when merlin
> tries to get installed again. The remedy is to remove all merlin related
> files (*merlin*) from the installation directory ($PREFIX) and then
> continue the installation from where things go wrong.
>

>
> Regards,
> Brad
>
>
> On 08/21/2012 06:15 AM, Niz wrote:
> > 2012/8/21 Niz <niz.moussatat at gmail.com>
> >
> >> This is the
> >> /home/tora/build/pylith/nemesis-build/config.log
> >> PS: It happens when I run  make command, that the compilation stopps
> >> earlier on a loop command [it is not systematic]. If I reran it again,
> and
> >> again i reach also this point.
> >>
> >>
> >> 2012/8/21 Matthew Knepley <knepley at mcs.anl.gov>
> >>
> >>> On Tue, Aug 21, 2012 at 2:59 AM, Niz <niz.moussatat at gmail.com> wrote:
> >>>
> >>>> Hello Pylith People
> >>>>
> >>>> I never seem to get this instalation process right.
> >>>> I did the following:
> >>>>    mkdir -p $HOME/src/pylith
> >>>>    cd $HOME/src/pylith
> >>>>    mv $HOME/Downloads/pylith-installer-1.7.1-0.tgz .
> >>>>    tar -zxf pylith-installer-1.7.1-0.tgz
> >>>>
> >>>>    mkdir -p $HOME/build/pylith
> >>>>    cd $HOME/build/pylith
> >>>>    $HOME/src/pylith/pylith-installer-1.7.1-0/configure \
> >>>>      --with-make-threads=2 \
> >>>>      --prefix=$HOME/pylith
> >>>>    source setup.sh
> >>>>    make LDFLAGS+=-ldl
> >>>>
> >>>> %% I added the LDFLAGS because of a previous error
> >>>> %% and cleaned the build folder
> >>>>
> >>>
> >>> Yes, this is the correct fix. The cppunit configure must be imperfect.
> >>>
> >>>
> >>>> The install process advances further till it hits:
> >>>> checking whether -lpython2.7 is a shared library... yes
> >>>> configure: downloading missing Python dependencies
> >>>> configure: error: in `/home/tora/build/pylith/nemesis-build':
> >>>> configure: error: cannot download missing Python dependencies
> >>>> See `config.log' for more details
> >>>>
> >>>
> >>> This could be a connectivity issue with this machine. Can you send
> >>> /home/tora/build/pylith/nemesis-build/config.log?
> >>>
> >>>    Thanks,
> >>>
> >>>       Matt
> >>>
> >>>
> >>>>   make[3]: Entering directory `/home/tora/build/pylith/nemesis-build'
> >>>> make[3]: *** No targets specified and no makefile found.  Stop.
> >>>> make[3]: Leaving directory `/home/tora/build/pylith/nemesis-build'
> >>>> make[2]: *** [nemesis] Error 2
> >>>> make[2]: Leaving directory `/home/tora/build/pylith'
> >>>> make[1]: *** [installed_nemesis] Error 2
> >>>> make[1]: Leaving directory `/home/tora/build/pylith'
> >>>> make: *** [installed_pylith] Error 2
> >>>>
> >>>> As said in the Config.log, I run a Ubuntu 12.04 64bit, its a clean
> >>>> slate, meaning I am trying to make pylith work with 2 thread before
> >>>> installing anything else.
> >>>>
> >>>>
> >>>> Regards
> >>>>
> >>>>
> >>>> _______________________________________________
> >>>> CIG-SHORT mailing list
> >>>> CIG-SHORT at geodynamics.org
> >>>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
> >>>>
> >>>>
> >>>
> >>>
> >>> --
> >>> What most experimenters take for granted before they begin their
> >>> experiments is infinitely more interesting than any results to which
> their
> >>> experiments lead.
> >>> -- Norbert Wiener
> >>>
> >>
> >>
> >>
> >> --
> >> *******************************************************
> >> MOUSSATAT Nizar - PhD Student
> >> ISTerre - Maison des Geosiences - Equipe risques
> >> Bureau 1121 (1er étage)
> >> Université de Grenoble, 38041 Grenoble Cedex 9, France
> >> E-mail: nizar.moussatat at obs.ujf-grenoble.fr
> >> Tel Bureau: +33 (0)4 76 63 51 81
> >> Mobile       +33 (0) 6 43 59 39 44
> >> Home        +33 (0) 4 80 38 45 93
> >> *******************************************************
> >>
> >>
> >
> >
> >
> >
> > _______________________________________________
> > CIG-SHORT mailing list
> > CIG-SHORT at geodynamics.org
> > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
> >
>
> _______________________________________________
> CIG-SHORT mailing list
> CIG-SHORT at geodynamics.org
> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>

-- 
*******************************************************
MOUSSATAT Nizar - PhD Student
ISTerre - Maison des Geosiences - Equipe risques
Bureau 1121 (1er étage)
Université de Grenoble, 38041 Grenoble Cedex 9, France
E-mail: nizar.moussatat at obs.ujf-grenoble.fr
Tel Bureau: +33 (0)4 76 63 51 81
Mobile       +33 (0) 6 43 59 39 44
Home        +33 (0) 4 80 38 45 93
*******************************************************
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://geodynamics.org/pipermail/cig-short/attachments/20120821/152e718e/attachment-0001.htm 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: config_global.log
Type: application/octet-stream
Size: 36560 bytes
Desc: not available
Url : http://geodynamics.org/pipermail/cig-short/attachments/20120821/152e718e/attachment-0002.obj 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: config_of_nemesis.log
Type: application/octet-stream
Size: 19371 bytes
Desc: not available
Url : http://geodynamics.org/pipermail/cig-short/attachments/20120821/152e718e/attachment-0003.obj 