[CIG-SHORT] Error on running .cfg files
Mahesh Singh Dhar (msdhar)
msdhar at memphis.edu
Fri Feb 17 09:24:46 PST 2012
Hi,
Default shell environment in my lab is tcsh. As your suggestion I typed "bash" and followed your steps and after running " pylith axialdisp.cfg" , then again similar error appeared as previous one.
Just for information;
echo $SHELL gives tcsh and
echo $0 gives bash
-----------------------------------------------------------
ceriml09:~ msdhar$ echo $SHELL
/bin/tcsh
ceriml09:~ msdhar$ bash
bash-3.2$ echo $SHELL
/bin/tcsh
bash-3.2$ echo $0
bash
bash-3.2$
--------------------------------------------------------------
Does it make any difference?
and I did unset PYTHOPATH also and after running pylith same error message appeared.
I am looking forward for your suggestion.
sincerely,
Mahesh Singh Dhar
Graduate Research Assistant
CERI/University of Memphis
________________________________________
On 2/10/12 3:34 PM, "Brad Aagaard" <baagaard at usgs.gov> wrote:
>On 02/10/2012 01:15 PM, Mahesh S Dhar wrote:
>> Hi,
>> I installed Pylith software (using the link;
>>pylith-1.6.2-darwin-10.6.8.tgz) and ran set up file by source setup.sh.
>>From tutorial file I tried to run .cfg file ( e.g. pylith
>>axialdisp.cfg). the error message comes as below;
>> ceriml09:pylith-1.6.2-darwin-10.6.8 msdhar$ source setup.sh Ready to
>>run PyLith.ceriml09:pylith-1.6.2-darwin-10.6.8 msdhar$ cd ssetup.sh
>>share/ src/ ceriml09:pylith-1.6.2-darwin-10.6.8 msdhar$ cd
>>src/pylith/examples/twocells/twot twotet4/ twotet4-geoproj/
>>twotri3/ ceriml09:pylith-1.6.2-darwin-10.6.8 msdhar$ cd
>>src/pylith/examples/twocells/twotri3/ceriml09:twotri3 msdhar$ pylith
>>axialdisp.cfg 'import site' failed; use -v for tracebackTraceback (most
>>recent call last): File
>>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/bin/pylith", line
>>28, in<module> import os.path, sys, site File
>>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site-p
>>ackages/site.py", line 73, in<module> __boot() File
>>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site-p
>>ackages/site.py", line 33, in __boot
>>imp.load_module('site',stream,path,descr) File
>>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.
>py", line 525, in<module> main() File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 508, in main known_paths = addsitepackages(known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 288, in addsitepackages addsitedir(sitedir, known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 185, in addsitedir addpackage(sitedir, name, known_paths)
>File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 159, in addpackage if not dircase in known_paths and
>os.path.exists(dir): File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/generic
>path.py", line 18, in exists st = os.stat(path)TypeError: stat()
>argument 1 must be encoded string without NULL bytes, not
>strceriml09:twotri3 msdhar$ pysetReady to run
>PyLith.ceriml09:pylith-1.6.2-darwin-10.6.8 msdhar$ pylith
>axialdisp.cfg'import site' failed;
> use -v for tracebackTraceback (most recent call last): File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/bin/pylith", line
>28, in<module> import os.path, sys, site File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site-pa
>ckages/site.py", line 73, in<module> __boot() File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site-pa
>ckages/site.py", line 33, in __boot
>imp.load_module('site',stream,path,descr) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 525, in<module> main() File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 508, in main known_paths = addsitepackages(known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 288, in addsitepackages addsitedir(sitedir, known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 185, in addsitedir a
>ddpackage(sitedir, name, known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 159, in addpackage if not dircase in known_paths and
>os.path.exists(dir): File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/generic
>path.py", line 18, in exists st = os.stat(path)TypeError: stat()
>argument 1 must be encoded string without NULL bytes, not
>strceriml09:pylith-1.6.2-darwin-10.6.8 msdhar$ cd
>src/pylith/examples/twocells/twotri3/ceriml09:twotri3 msdhar$ pylith
>axialdisp.cfg'import site' failed; use -v for tracebackTraceback (most
>recent call last): File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/bin/pylith", line
>28, in<module> import os.path, sys, site File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site-pa
>ckages/site.py", line 73, in<module> __boot() File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site-pa
>ckages/site.py", line 33, in __boot i
>mp.load_module('site',stream,path,descr) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 525, in<module> main() File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 508, in main known_paths = addsitepackages(known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 288, in addsitepackages addsitedir(sitedir, known_paths) File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 185, in addsitedir addpackage(sitedir, name, known_paths)
>File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/site.py
>", line 159, in addpackage if not dircase in known_paths and
>os.path.exists(dir): File
>"/gaia/home/msdhar/pylith/pylith-1.6.2-darwin-10.6.8/lib/python2.6/generic
>path.py", line 18, in exists st = os.stat(path)TypeError: stat()
>argument 1 must be encoded string without NULL bytes, not
>strceriml09:twotri3
> msdhar$
>> How do I fix this? I am using MAC OS X Version 10.6.8.
>> sincerely,mahesh
>
>The error you are getting is likely caused by conflicts in your
>environment setup. First, make sure you are using the bash shell.
>
>echo $SHELL
>
>The output should be "/bin/bash". If the output is not /bin/bash, then
>simply startup a bash shell before running "source setup.sh" by typing
>"bash". If you are using the bash shell, then please try the following
>from the top-level pylith directory (where setup.sh) is:
>
>unset PYTHONPATH
>unset DYLD_LIBRARY_PATH
>PATH=/bin:/usr/bin
>source setup.sh
>cd src/pylith/examples/twocells/twotri3
>pylith axialdisp.cfg
>
>Regards,
>Brad
>_______________________________________________
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