[CIG-SHORT] dynamic benchmark problem

[Brad Aagaard]

Roby,

It has been several years since I ran this benchmark. I am not sure if I 
have actually used the 100m settings for this benchmark. I have used 
this mesh in TPV24-25. In those cases, when I ran the 100m resolution 
case, I used the following scales for nondimensionalizing the problem:

normalizer.shear_wave_speed = 3333*m/s
normalizer.wave_period = 0.3*s

NOTE: You will need a machine with lots of memory or a cluster to run 
the simulation at 100m. Remember that in 3-D using a mesh with 1/2 the 
grid spacing increases the problem size by a factor of 8x.

Regards,
Brad

On 4/15/13 10:32 AM, Roby Douilly wrote:
> Brad,
>
> I run it with this command:
>
> pylith tet4.cfg tpv15.cfg tpv15_tet4_100.cfg
>
>
> Roby
>
>
> On Apr 15, 2013, at 1:28 PM, Brad Aagaard <baagaard at usgs.gov
> <mailto:baagaard at usgs.gov>> wrote:
>
>> Roby,
>>
>> Please give the *exact* command line arguments you are using. You could
>> be leaving out a .cfg file or using outdated files.
>>
>> Brad
>>
>> On 4/15/13 10:24 AM, Roby Douilly wrote:
>>> Hello,
>>>
>>> I am trying to run the scec dynamic benchmark tpv15 for 100m. Each time
>>> I tried to run it, I got the error message below.
>>> There is no error message when I run it for 200m. Is there a way to
>>> avoid this error.
>>>
>>> Thanks,
>>>
>>> Roby
>>>
>>>
>>>
>>>
>>> RuntimeError: Determinant of Jacobian (9.85786e-07) for cell 1668 is
>>> smaller than minimum permissible value (1e-06)!
>>>
>>> --------------------------------------------------------------------------
>>> MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
>>> with errorcode -1.
>>>
>>> NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
>>> You may or may not see output from other processes, depending on
>>> exactly when Open MPI kills them.
>>> --------------------------------------------------------------------------
>>> --------------------------------------------------------------------------
>>> mpirun has exited due to process rank 0 with PID 17553 on
>>> node chilmark.eas.purdue.edu <http://chilmark.eas.purdue.edu>
>>> <http://chilmark.eas.purdue.edu> exiting
>>> without calling "finalize". This may
>>> have caused other processes in the application to be
>>> terminated by signals sent by mpirun (as reported here).
>>> --------------------------------------------------------------------------
>>> /opt/pylith/bin/nemesis: mpirun: exit 255
>>> /opt/pylith/bin/pylith: /opt/pylith/bin/nemesis: exit 1
>>>
>>>
>>>
>>>
>>> ---------------------------------------------------------------------------------
>>> Roby Douilly
>>> Graduate Student
>>> Department of Earth, Atmospheric, and Planetary Sciences
>>> Purdue University
>>> 550 Stadium Mall Dr.
>>> West Lafayette, IN 47907-2051
>>> rdouilly at purdue.edu <mailto:rdouilly at purdue.edu>
>>> <mailto:rdouilly at purdue.edu>
>>>
>>>
>>>
>>>
>>>
>>>
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>>
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>
>
> Roby
>
> ---------------------------------------------------------------------------------
> Roby Douilly
> Graduate Student
> Department of Earth, Atmospheric, and Planetary Sciences
> Purdue University
> 550 Stadium Mall Dr.
> West Lafayette, IN 47907-2051
> rdouilly at purdue.edu <mailto:rdouilly at purdue.edu>
>
>
>
>
>
>
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