[CIG-SHORT] stdout stderr of PBS parallel run

[Charles Williams]

Hi Birendra,

Try looking in /var/torque/spool

Cheers,
Charles


On 18/03/2013, at 9:19 AM, Birendra jha wrote:

> I guess we don't have that utility on our system:
> 
> [bjha at login twowaycoupled]$ qpeek -o 65848
> qpeek: Command not found.
> 
> Can I install it locally? Is there any other option? 
> I also couldn't locate /opt/torque folder. The only folder I can see in the compute node is scratch/ which does not have stdout.
> 
> Thanks
> Birendra
> 
> 
> --- On Sun, 3/17/13, Brad Aagaard <baagaard at usgs.gov> wrote:
> 
>> From: Brad Aagaard <baagaard at usgs.gov>
>> Subject: Re: [CIG-SHORT] stdout stderr of PBS parallel run
>> To: cig-short at geodynamics.org
>> Date: Sunday, March 17, 2013, 11:49 PM
>> Yes, use qpeek as Surendra
>> suggested.
>> 
>> The stdout and stderr files are usually stored locally on
>> the compute 
>> node of process 0 in a directory like /opt/torque/spool.
>> They are copied 
>> to the filenames specified in the job parameters when the
>> job completes.
>> 
>> Brad
>> 
>> 
>> On 3/17/13 11:12 AM, surendra at caltech.edu
>> wrote:
>>> 
>>> On Mar 17, 2013, at 11:08 AM, Birendra jha <bjha7333 at yahoo.com
>>> <mailto:bjha7333 at yahoo.com>>
>> wrote:
>>> 
>>>> Hi
>>>> When I run pylith in parallel using PBS queue
>> system, the stdout.txt
>>>> and stderr.txt are created in the run folder AFTER
>> the run is over. I
>>>> want to see these files during the simulation,
>> especially stdout.txt.
>>>> What option should I use in the pylithapp.cfg?
>>>> 
>>> 
>>> You can use 'qpeek' to check .err and .out files before
>> the completion
>>> of a run.
>>> 
>>>     qpeek -o <jobid>
>>>     qpeek -e <jobid>
>>> 
>>> 
>>> --Surendra
>>> 
>>> 
>>> _______________________________________________
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>> 
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Charles A. Williams
Scientist
GNS Science
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PO Box 30368
Lower Hutt  5040
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C.Williams at gns.cri.nz

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