[CIG-SHORT] Not able to run dynamic fault (step11) with Pylith-1.9.0 installed from source

[Charles Williams]

Hmm.  This runs correctly for me using my version of 1.9-stable.  Are you able to do something like the following:

pylith step11.cfg --problem.interfaces.help-components

This appears to be some issue with interpreting the .cfg file.  Let me know if you're able to run the command above.  If not, we'll have to do some more investigating.

Cheers,
Charles


On 2/09/2013, at 5:26 PM, Birendra jha wrote:

> Hi Pylith developers
> 
> I installed Pylith-1.9.0 using the installer on the pylith website. Installation was successful with no error messages except in the beginning when I ran configure I got a message about existing software: 
> 
> WARNING: Existing version of HDF5 installed. Found /usr/bin/h5dump
> WARNING: Existing version of NetCDF installed. Found /usr/bin/ncdump
> 
> configure: error: "Configure failed due to conflict with existing software. Existing software may interfere with proper installation of PyLith, may be configured incorrectly for use with PyLith, or may have been built with incompatible compilers. Remove existing software (RECOMMENDED) or reconfigure with --enable-force-install to override error message. "
> 
> As per suggestion, I reran configure with --enable-force-install option, and it finished successfully along with 'make'.
> 
> I am able to run successfully all examples e.g. step01, step06 except examples with dynamic fault e.g. step11:
> 
> [bjha at login hex8]$ pylith step11.cfg 
> Traceback (most recent call last):
>  File "/data/bjha/pylith-1.9.0/bin/pylith", line 39, in <module>
>    start(applicationClass=PyLithApp)
>  File "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/__init__.py", line 41, in start
>    shell.run(**kwds)
>  File "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/Shell.py", line 125, in run
>    app.applyConfiguration(context)
>  File "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventory/Configurable.py", line 84, in applyConfiguration
>    raise ValueError("%s\nBacktrace - Component %s" % (err.message, aliases))
> ValueError: Error while configuring spatial database reader (simpleioascii, iohandler):
> Filename for spatial database not specified.
> Backtrace - Component simpleioascii, iohandler
> Backtrace - Component simpledb, slip
> Backtrace - Component stepslipfn, slip_function
> Backtrace - Component eqkinsrc, rupture
> Backtrace - Component singlerupture, eq_srcs
> Backtrace - Component faultcohesivekin, fault
> Backtrace - Component interfaces
> Backtrace - Component timedependent, problem
> Backtrace - Component pylithapp
> 
> Why is it saying faultcohesivekin when it is FaultCohesiveDyn in the step11.cfg? I am able to run this in my Pylith-1.8.0 copy.
> Please help. 
> 
> Thanks and regards
> Birendra
> 
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> CIG-SHORT at geodynamics.org
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Charles A. Williams
Scientist
GNS Science
1 Fairway Drive, Avalon
PO Box 30368
Lower Hutt  5040
New Zealand
ph (office): 0064-4570-4566
fax (office): 0064-4570-4600
C.Williams at gns.cri.nz

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