[CIG-SHORT] Not able to run dynamic fault (step11) with Pylith-1.9.0 installed from source

Charles Williams willic3 at gmail.com
Tue Sep 3 14:29:06 PDT 2013 

Brad,

Should he also remove the SWIG-generated files?

Charles


On 4/09/2013, at 9:06 AM, Brad Aagaard wrote:

> Birendra,
> 
> Undefined references means it found the header file but not the routines in the libpylith.so file. Try rebuilding pylith.
> 
> cd pylith-build
> cd libsrc/pylith
> make clean
> make
> make install
> 
> Then try the libtests again
> cd unittests/libtests/friction
> make check
> 
> Brad
> 
> On 09/03/2013 01:50 PM, Birendra jha wrote:
>> Brad
>> 
>> The libtests failed at SlipWeakeningTimeStable (see below). How can I fix it? The env variables look correct, friction module has SlipWeakeningTimeStable (I checked friction_wrap.cxx, friction.py), libsrc/pylith/friction/ also has the SlipWeakeningTimeStable files.
>> 
>> /bin/sh ../../../libtool --tag=CXX   --mode=link mpicxx  -g -O2 -DMPICH_IGNORE_CXX_SEEK   -L/data/bjha/pylith-1.9.0/lib  -o testfriction test_friction.o TestFrictionModel.o TestStaticFriction.o TestSlipWeakening.o TestSlipWeakeningTime.o TestSlipWeakeningTimeStable.o TestSlipWeakeningStress.o TestRateStateAgeing.o TestTimeWeakening.o FrictionModelData.o StaticFrictionData.o SlipWeakeningData.o SlipWeakeningTimeData.o SlipWeakeningTimeStableData.o SlipWeakeningStressData.o RateStateAgeingData.o TimeWeakeningData.o -lcppunit -ldl ../../../libsrc/pylith/libpylith.la -lspatialdata -L/data/bjha/pylith-1.9.0/lib -lpetsc -Wl,-rpath,/data/bjha/pylith-1.9.0/lib -lml -lflapack -lfblas -lpthread -lchaco -Wl,-rpath,/data/bjha/pylith-1.9.0/lib -L/data/bjha/pylith-1.9.0/lib -lhdf5 -Wl,-rpath,/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -L/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.6.3
>>  -L/usr/lib/gcc/x86_64-redhat-linux/4.6.3 -Wl,-rpath,/mit/software/python/python-2.7.2/lib -L/mit/software/python/python-2.7.2/lib -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lgfortran -lm -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lz -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl -lz -L/mit/software/python/python-2.7.2/lib -L/mit/software/python/python-2.7.2/lib/python2.7/config -lpython2.7 -lpthread -ldl -lutil -lm -lnetcdf_c++ -lnetcdf -lproj -lhdf5
>> libtool: link: mpicxx -g -O2 -DMPICH_IGNORE_CXX_SEEK -o .libs/testfriction test_friction.o TestFrictionModel.o TestStaticFriction.o TestSlipWeakening.o TestSlipWeakeningTime.o TestSlipWeakeningTimeStable.o TestSlipWeakeningStress.o TestRateStateAgeing.o TestTimeWeakening.o FrictionModelData.o StaticFrictionData.o SlipWeakeningData.o SlipWeakeningTimeData.o SlipWeakeningTimeStableData.o SlipWeakeningStressData.o RateStateAgeingData.o TimeWeakeningData.o -Wl,-rpath -Wl,/data/bjha/pylith-1.9.0/lib -Wl,-rpath -Wl,/data/bjha/pylith-1.9.0/lib -Wl,-rpath -Wl,/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-redhat-linux/4.6.3 -Wl,-rpath -Wl,/mit/software/python/python-2.7.2/lib  -L/data/bjha/pylith-1.9.0/lib /data/bjha/pylith-1.9.0/lib/libcppunit.so ../../../libsrc/pylith/.libs/libpylith.so /data/bjha/pylith-1.9.0/lib/libspatialdata.so -lpetsc -lml -lflapack -lfblas -lchaco
>>  -L/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.6.3 -L/mit/software/python/python-2.7.2/lib /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi_f90.so /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi_f77.so -lgfortran -lquadmath /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi_cxx.so -lstdc++ /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi.so /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libopen-rte.so /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libopen-pal.so -lnsl -lgcc_s -lz -L/mit/software/python/python-2.7.2/lib/python2.7/config -lpython2.7 -lpthread -ldl -lutil -lm /data/bjha/pylith-1.9.0/lib/libnetcdf_c++.so /data/bjha/pylith-1.9.0/lib/libnetcdf.so /data/bjha/pylith-1.9.0/lib/libproj.so /data/bjha/pylith-1.9.0/lib/libhdf5.so -pthread -Wl,-rpath -Wl,/data/bjha/pylith-1.9.0/lib -Wl,-rpath
>>  -Wl,/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib
>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::setUp()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:35: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::testHasPropStateVar()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:83: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:93: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:93: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::testStateVarsMetadata()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:68: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:75: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:75: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::testPropertiesMetadata()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:45: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:60: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:60: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::setUp()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:35: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::testHasPropStateVar()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:75: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:83: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:83: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::testStateVarsMetadata()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:60: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:67: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:67: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::testPropertiesMetadata()':
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:45: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:52: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:52: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>> collect2: ld returned 1 exit status
>> make[3]: *** [testfriction] Error 1
>> make[3]: Leaving directory `/net/eaps-80-11/data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction'
>> make[2]: *** [check-am] Error 2
>> make[2]: Leaving directory `/net/eaps-80-11/data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction'
>> make[1]: *** [check-recursive] Error 1
>> make[1]: Leaving directory `/net/eaps-80-11/data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction'
>> make: *** [check-recursive] Error 1
>> 
>> Thanks and regards
>> Birendra
>> 
>> --------------------------------------------
>> On Tue, 9/3/13, Brad Aagaard <baagaard at usgs.gov> wrote:
>> 
>>  Subject: Re: [CIG-SHORT] Not able to run dynamic fault (step11) with Pylith-1.9.0 installed from source
>>  To: cig-short at geodynamics.org
>>  Date: Tuesday, September 3, 2013, 8:40 AM
>> 
>>  On 9/2/13 7:32 PM, Birendra jha
>>  wrote:
>>  > Brad
>>  >
>>  > Running ldd lists the correct pylith version:
>>  > libpylith.so.0 =>
>>  /data/bjha/pylith-1.9.0/lib/libpylith.so.0
>>  (0x00007f5460452000)
>>  >
>>  > How should I check python unit tests?
>> 
>>  Start by not cleaning, just run the tests.
>> 
>>  To be safe, start with the libtests
>>  cd pylith-build/unittests/libtests
>>  make check
>> 
>>  and if they pass, do the python unit tests (note that these
>>  often don't
>>  stop even if there is an error, so you need to actually
>>  check the
>>  output). Pay particular attention to the friction and fault
>>  unit tests.
>>  cd pylith-build/unittests/pytests
>>  make check
>> 
>>  If these pass, then look at all of the environment variables
>>  in
>>  config.log and compare them against the output of "env". If
>>  the tests
>>  pass then something must be different between the
>>  environment when you
>>  built and now.
>> 
>>  Brad
>> 
>>  > --------------------------------------------
>>  > On Tue, 9/3/13, Brad Aagaard <baagaard at usgs.gov>
>>  wrote:
>>  >
>>  >   Subject: Re: [CIG-SHORT] Not able to
>>  run dynamic fault (step11) with Pylith-1.9.0 installed from
>>  source
>>  >   To: cig-short at geodynamics.org
>>  >   Date: Tuesday, September 3, 2013, 7:23
>>  AM
>>  >
>>  >   Birendra,
>>  >
>>  >   The error you are getting with
>>  "import
>>  >   pylith.faults.FaultCohesiveDyn"
>>  >   indicates that the friction module is
>>  missing a symbol for
>>  >   pylith::friction::SlipWeakeningTimeStable.
>>  This was added in
>>  >   v1.9, so
>>  >   either the module or pylith library
>>  didn't build properly or
>>  >   your
>>  >   environment when you run the examples
>>  is finding the pylith
>>  >   library from
>>  >   v1.8.
>>  >
>>  >   Run "ldd
>>  >   /data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/_frictionmodule.so".
>>  >
>>  >   If it lists libpylith.so from v1.8,
>>  then you need to fix
>>  >   your
>>  >   environment (check it against the
>>  variables from setup.sh).
>>  >   If it shows
>>  >   libpylith.so from v1.9, then your
>>  pylith build has a
>>  >   problem. Check the
>>  >   python unit tests again.
>>  >
>>  >   Brad
>>  >
>>  >   On 9/2/13 6:27 PM, Birendra jha
>>  wrote:
>>  >   > Brad
>>  >   >
>>  >   > I agree something is wrong with
>>  my installation.
>>  >   However, all the tests passed when I
>>  built pylith using the
>>  >   installer.
>>  >   > Here is the result of running
>>  nemesis:
>>  >   >
>>  >   > [bjha at login refined]$ nemesis
>>  >   > Python 2.7.2 (default, Jul 12
>>  2011, 10:24:30)
>>  >   > [GCC 4.6.0 20110530 (Red Hat
>>  4.6.0-9)] on linux2
>>  >   > Type "help", "copyright",
>>  "credits" or "license" for
>>  >   more information.
>>  >   >>>> import
>>  pylith.faults.FaultCohesiveDyn
>>  >   > Traceback (most recent call
>>  last):
>>  >   >    File
>>  "<stdin>", line 1, in
>>  >   <module>
>>  >   >    File
>>  >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py",
>>  >   line 34, in <module>
>>  >   >      class
>>  >   FaultCohesiveDyn(FaultCohesive,
>>  Integrator,
>>  >   ModuleFaultCohesiveDyn):
>>  >   >    File
>>  >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py",
>>  >   line 75, in FaultCohesiveDyn
>>  >   >      from
>>  pylith.friction.StaticFriction
>>  >   import StaticFriction
>>  >   >    File
>>  >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/StaticFriction.py",
>>  >   line 26, in <module>
>>  >   >      from friction
>>  import StaticFriction
>>  >   as ModuleStaticFriction
>>  >   >    File
>>  >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/friction.py",
>>  >   line 26, in <module>
>>  >   >      _friction =
>>  swig_import_helper()
>>  >   >    File
>>  >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/friction.py",
>>  >   line 22, in swig_import_helper
>>  >   >      _mod =
>>  imp.load_module('_friction',
>>  >   fp, pathname, description)
>>  >   > ImportError:
>>  >   /data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/_frictionmodule.so:
>>  >   undefined symbol:
>>  >   _ZN6pylith8friction23SlipWeakeningTimeStableC1Ev
>>  >   >>>>
>>  pylith.faults.FaultCohesiveDyn.__file__
>>  >   > Traceback (most recent call
>>  last):
>>  >   >    File
>>  "<stdin>", line 1, in
>>  >   <module>
>>  >   > NameError: name 'pylith' is not
>>  defined
>>  >   >>>>
>>  >   >
>>  >   > I checked PATH, PYTHONPATH and
>>  they are exclusively
>>  >   pointing to Pylith-1.9.0, not
>>  Pylith-1.8.0.
>>  >   >
>>  >   > What do you suggest?
>>  >   > Birendra
>>  >   >
>>  --------------------------------------------
>>  >   > On Tue, 9/3/13, Brad Aagaard
>>  <baagaard at usgs.gov>
>>  >   wrote:
>>  >   >
>>  >   >   Subject: Re:
>>  [CIG-SHORT] Not able to
>>  >   run dynamic fault (step11) with
>>  Pylith-1.9.0 installed from
>>  >   source
>>  >   >   To: cig-short at geodynamics.org
>>  >   >   Date: Tuesday,
>>  September 3, 2013, 2:29
>>  >   AM
>>  >   >
>>  >   >   Birendra,
>>  >   >
>>  >   >   I don't find any
>>  problems with
>>  >   examples/3d/hex8/step11. It
>>  >   >   runs fine for
>>  >   >   me using the
>>  binary and building from
>>  >   source. My guess is
>>  >   >   that something
>>  >   >   is wrong with
>>  your installation. Did
>>  >   you wipe out all of the
>>  >   >   old PyLith
>>  >   >   stuff in your
>>  PATH, PYTHONPATH, etc or
>>  >   at least adjust your
>>  >   >   PATH,
>>  >   >   PYTHONPATH, etc
>>  so that they only see
>>  >   v1.9.0? Did all of the
>>  >   >   tests pass
>>  >   >   when you built
>>  pylith using the
>>  >   installer?
>>  >   >
>>  >   >   What happens
>>  when you do the
>>  >   following?
>>  >   >   nemesis
>>  >   >   import
>>  pylith.faults.FaultCohesiveDyn
>>  >   >   pylith.faults.FaultCohesiveDyn.__file__
>>  >   >
>>  >   >   You can also try
>>  running
>>  >   >   pylithinfo
>>  --verbose step11.cfg
>>  >   >
>>  >   >   The output will
>>  be written to
>>  >   pylith_parameters.txt. It will
>>  >   >   show you
>>  >   >   where every
>>  parameter is set. You
>>  >   would first need to fix
>>  >   >   any validation
>>  >   >   errors to get
>>  this far, because those
>>  >   are tripped before the
>>  >   >   parameters
>>  >   >   can be written.
>>  >   >
>>  >   >   Regards,
>>  >   >   Brad
>>  >   >
>>  >   >
>>  >   >   On 9/1/13 10:26
>>  PM, Birendra jha
>>  >   wrote:
>>  >   >   > Hi Pylith
>>  developers
>>  >   >   >
>>  >   >   > I installed
>>  Pylith-1.9.0 using
>>  >   the installer on the
>>  >   >   pylith website.
>>  Installation was
>>  >   successful with no error
>>  >   >   messages except
>>  in the beginning when
>>  >   I ran configure I got
>>  >   >   a message about
>>  existing software:
>>  >   >   >
>>  >   >   > WARNING:
>>  Existing version of HDF5
>>  >   installed. Found
>>  >   >   /usr/bin/h5dump
>>  >   >   > WARNING:
>>  Existing version of
>>  >   NetCDF installed. Found
>>  >   >   /usr/bin/ncdump
>>  >   >   >
>>  >   >   > configure:
>>  error: "Configure
>>  >   failed due to conflict
>>  >   >   with existing
>>  software. Existing
>>  >   software may interfere with
>>  >   >   proper
>>  installation of PyLith, may be
>>  >   configured incorrectly
>>  >   >   for use with
>>  PyLith, or may have been
>>  >   built with
>>  >   >   incompatible
>>  compilers. Remove
>>  >   existing software
>>  >   >   (RECOMMENDED) or
>>  reconfigure with
>>  >   --enable-force-install to
>>  >   >   override error
>>  message. "
>>  >   >   >
>>  >   >   > As per
>>  suggestion, I reran
>>  >   configure with
>>  >   >   --enable-force-install
>>  option, and it
>>  >   finished successfully
>>  >   >   along with
>>  'make'.
>>  >   >   >
>>  >   >   > I am able
>>  to run successfully all
>>  >   examples e.g. step01,
>>  >   >   step06 except
>>  examples with dynamic
>>  >   fault e.g. step11:
>>  >   >   >
>>  >   >   > [bjha at login
>>  hex8]$ pylith
>>  >   step11.cfg
>>  >   >   > Traceback
>>  (most recent call
>>  >   last):
>>  >   >   >
>>    File
>>  >   "/data/bjha/pylith-1.9.0/bin/pylith",
>>  >   >   line 39, in
>>  <module>
>>  >   >   >
>>  >   start(applicationClass=PyLithApp)
>>  >   >   >
>>    File
>>  >   >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/__init__.py",
>>  >   >   line 41, in
>>  start
>>  >   >   >
>>  >   shell.run(**kwds)
>>  >   >   >
>>    File
>>  >   >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/Shell.py",
>>  >   >   line 125, in
>>  run
>>  >   >   >
>>  >   app.applyConfiguration(context)
>>  >   >   >
>>    File
>>  >   >   "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventory/Configurable.py",
>>  >   >   line 84, in
>>  applyConfiguration
>>  >   >   >
>>      raise
>>  >   ValueError("%s\nBacktrace -
>>  >   >   Component %s" %
>>  (err.message,
>>  >   aliases))
>>  >   >   > ValueError:
>>  Error while
>>  >   configuring spatial database
>>  >   >   reader
>>  (simpleioascii, iohandler):
>>  >   >   > Filename
>>  for spatial database not
>>  >   specified.
>>  >   >   > Backtrace -
>>  Component
>>  >   simpleioascii, iohandler
>>  >   >   > Backtrace -
>>  Component simpledb,
>>  >   slip
>>  >   >   > Backtrace -
>>  Component stepslipfn,
>>  >   slip_function
>>  >   >   > Backtrace -
>>  Component eqkinsrc,
>>  >   rupture
>>  >   >   > Backtrace -
>>  Component
>>  >   singlerupture, eq_srcs
>>  >   >   > Backtrace -
>>  Component
>>  >   faultcohesivekin, fault
>>  >   >   > Backtrace -
>>  Component interfaces
>>  >   >   > Backtrace -
>>  Component
>>  >   timedependent, problem
>>  >   >   > Backtrace -
>>  Component pylithapp
>>  >   >   >
>>  >   >   > Why is it
>>  saying faultcohesivekin
>>  >   when it is
>>  >   >   FaultCohesiveDyn
>>  in the step11.cfg? I
>>  >   am able to run this in
>>  >   >   my Pylith-1.8.0
>>  copy.
>>  >   >   > Please
>>  help.
>>  >   >   >
>>  >   >   > Thanks and
>>  regards
>>  >   >   > Birendra
>>  >   >   >
>>  >   >   >
>>  >   _______________________________________________
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>>  >   >   >
>>  >   >
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>>  >   >
>>  >   >
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>>  >   >
>>  >
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>>  >
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>>  >
>> 
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> 
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Charles A. Williams
Scientist
GNS Science
1 Fairway Drive, Avalon
PO Box 30368
Lower Hutt  5040
New Zealand
ph (office): 0064-4570-4566
fax (office): 0064-4570-4600
C.Williams at gns.cri.nz

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