[CIG-SHORT] Not able to run dynamic fault (step11) with Pylith-1.9.0 installed from source
Brad Aagaard
baagaard at usgs.gov
Tue Sep 3 14:35:48 PDT 2013
Charles,
He is building from source, not the repository so he needs to use the
supplied SWIG files in the source tarball that the installer downloads.
The problem isn't a C++/Python/SWIG issue. The libtests fail with
undefined symbols, so something didn't build/install correctly.
Brad
On 09/03/2013 02:29 PM, Charles Williams wrote:
> Brad,
>
> Should he also remove the SWIG-generated files?
>
> Charles
>
>
> On 4/09/2013, at 9:06 AM, Brad Aagaard wrote:
>
>> Birendra,
>>
>> Undefined references means it found the header file but not the routines in the libpylith.so file. Try rebuilding pylith.
>>
>> cd pylith-build
>> cd libsrc/pylith
>> make clean
>> make
>> make install
>>
>> Then try the libtests again
>> cd unittests/libtests/friction
>> make check
>>
>> Brad
>>
>> On 09/03/2013 01:50 PM, Birendra jha wrote:
>>> Brad
>>>
>>> The libtests failed at SlipWeakeningTimeStable (see below). How can I fix it? The env variables look correct, friction module has SlipWeakeningTimeStable (I checked friction_wrap.cxx, friction.py), libsrc/pylith/friction/ also has the SlipWeakeningTimeStable files.
>>>
>>> /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -g -O2 -DMPICH_IGNORE_CXX_SEEK -L/data/bjha/pylith-1.9.0/lib -o testfriction test_friction.o TestFrictionModel.o TestStaticFriction.o TestSlipWeakening.o TestSlipWeakeningTime.o TestSlipWeakeningTimeStable.o TestSlipWeakeningStress.o TestRateStateAgeing.o TestTimeWeakening.o FrictionModelData.o StaticFrictionData.o SlipWeakeningData.o SlipWeakeningTimeData.o SlipWeakeningTimeStableData.o SlipWeakeningStressData.o RateStateAgeingData.o TimeWeakeningData.o -lcppunit -ldl ../../../libsrc/pylith/libpylith.la -lspatialdata -L/data/bjha/pylith-1.9.0/lib -lpetsc -Wl,-rpath,/data/bjha/pylith-1.9.0/lib -lml -lflapack -lfblas -lpthread -lchaco -Wl,-rpath,/data/bjha/pylith-1.9.0/lib -L/data/bjha/pylith-1.9.0/lib -lhdf5 -Wl,-rpath,/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -L/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.6.3
>>> -L/usr/lib/gcc/x86_64-redhat-linux/4.6.3 -Wl,-rpath,/mit/software/python/python-2.7.2/lib -L/mit/software/python/python-2.7.2/lib -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lgfortran -lm -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lz -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl -lz -L/mit/software/python/python-2.7.2/lib -L/mit/software/python/python-2.7.2/lib/python2.7/config -lpython2.7 -lpthread -ldl -lutil -lm -lnetcdf_c++ -lnetcdf -lproj -lhdf5
>>> libtool: link: mpicxx -g -O2 -DMPICH_IGNORE_CXX_SEEK -o .libs/testfriction test_friction.o TestFrictionModel.o TestStaticFriction.o TestSlipWeakening.o TestSlipWeakeningTime.o TestSlipWeakeningTimeStable.o TestSlipWeakeningStress.o TestRateStateAgeing.o TestTimeWeakening.o FrictionModelData.o StaticFrictionData.o SlipWeakeningData.o SlipWeakeningTimeData.o SlipWeakeningTimeStableData.o SlipWeakeningStressData.o RateStateAgeingData.o TimeWeakeningData.o -Wl,-rpath -Wl,/data/bjha/pylith-1.9.0/lib -Wl,-rpath -Wl,/data/bjha/pylith-1.9.0/lib -Wl,-rpath -Wl,/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -Wl,-rpath -Wl,/usr/lib/gcc/x86_64-redhat-linux/4.6.3 -Wl,-rpath -Wl,/mit/software/python/python-2.7.2/lib -L/data/bjha/pylith-1.9.0/lib /data/bjha/pylith-1.9.0/lib/libcppunit.so ../../../libsrc/pylith/.libs/libpylith.so /data/bjha/pylith-1.9.0/lib/libspatialdata.so -lpetsc -lml -lflapack -lfblas -lchaco
>>> -L/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.6.3 -L/mit/software/python/python-2.7.2/lib /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi_f90.so /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi_f77.so -lgfortran -lquadmath /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi_cxx.so -lstdc++ /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libmpi.so /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libopen-rte.so /mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib/libopen-pal.so -lnsl -lgcc_s -lz -L/mit/software/python/python-2.7.2/lib/python2.7/config -lpython2.7 -lpthread -ldl -lutil -lm /data/bjha/pylith-1.9.0/lib/libnetcdf_c++.so /data/bjha/pylith-1.9.0/lib/libnetcdf.so /data/bjha/pylith-1.9.0/lib/libproj.so /data/bjha/pylith-1.9.0/lib/libhdf5.so -pthread -Wl,-rpath -Wl,/data/bjha/pylith-1.9.0/lib -Wl,-rpath
>>> -Wl,/mit/software/gcc/gcc-4.6.0/pkg/openmpi/openmpi-1.4.3/lib
>>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::setUp()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:35: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::testHasPropStateVar()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:83: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:93: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:93: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::testStateVarsMetadata()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:68: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:75: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:75: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>>> TestSlipWeakeningTimeStable.o: In function `pylith::friction::TestSlipWeakeningTimeStable::testPropertiesMetadata()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:45: undefined reference to `pylith::friction::SlipWeakeningTimeStable::SlipWeakeningTimeStable()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:60: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningTimeStable.cc:60: undefined reference to `pylith::friction::SlipWeakeningTimeStable::~SlipWeakeningTimeStable()'
>>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::setUp()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:35: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::testHasPropStateVar()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:75: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:83: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:83: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::testStateVarsMetadata()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:60: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:67: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:67: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>>> TestSlipWeakeningStress.o: In function `pylith::friction::TestSlipWeakeningStress::testPropertiesMetadata()':
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:45: undefined reference to `pylith::friction::SlipWeakeningStress::SlipWeakeningStress()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:52: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>>> /data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction/../../../../pylith-1.9.0/unittests/libtests/friction/TestSlipWeakeningStress.cc:52: undefined reference to `pylith::friction::SlipWeakeningStress::~SlipWeakeningStress()'
>>> collect2: ld returned 1 exit status
>>> make[3]: *** [testfriction] Error 1
>>> make[3]: Leaving directory `/net/eaps-80-11/data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction'
>>> make[2]: *** [check-am] Error 2
>>> make[2]: Leaving directory `/net/eaps-80-11/data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction'
>>> make[1]: *** [check-recursive] Error 1
>>> make[1]: Leaving directory `/net/eaps-80-11/data/bjha/build/pylith-1.9.0/pylith-build/unittests/libtests/friction'
>>> make: *** [check-recursive] Error 1
>>>
>>> Thanks and regards
>>> Birendra
>>>
>>> --------------------------------------------
>>> On Tue, 9/3/13, Brad Aagaard <baagaard at usgs.gov> wrote:
>>>
>>> Subject: Re: [CIG-SHORT] Not able to run dynamic fault (step11) with Pylith-1.9.0 installed from source
>>> To: cig-short at geodynamics.org
>>> Date: Tuesday, September 3, 2013, 8:40 AM
>>>
>>> On 9/2/13 7:32 PM, Birendra jha
>>> wrote:
>>> > Brad
>>> >
>>> > Running ldd lists the correct pylith version:
>>> > libpylith.so.0 =>
>>> /data/bjha/pylith-1.9.0/lib/libpylith.so.0
>>> (0x00007f5460452000)
>>> >
>>> > How should I check python unit tests?
>>>
>>> Start by not cleaning, just run the tests.
>>>
>>> To be safe, start with the libtests
>>> cd pylith-build/unittests/libtests
>>> make check
>>>
>>> and if they pass, do the python unit tests (note that these
>>> often don't
>>> stop even if there is an error, so you need to actually
>>> check the
>>> output). Pay particular attention to the friction and fault
>>> unit tests.
>>> cd pylith-build/unittests/pytests
>>> make check
>>>
>>> If these pass, then look at all of the environment variables
>>> in
>>> config.log and compare them against the output of "env". If
>>> the tests
>>> pass then something must be different between the
>>> environment when you
>>> built and now.
>>>
>>> Brad
>>>
>>> > --------------------------------------------
>>> > On Tue, 9/3/13, Brad Aagaard <baagaard at usgs.gov>
>>> wrote:
>>> >
>>> > Subject: Re: [CIG-SHORT] Not able to
>>> run dynamic fault (step11) with Pylith-1.9.0 installed from
>>> source
>>> > To: cig-short at geodynamics.org
>>> > Date: Tuesday, September 3, 2013, 7:23
>>> AM
>>> >
>>> > Birendra,
>>> >
>>> > The error you are getting with
>>> "import
>>> > pylith.faults.FaultCohesiveDyn"
>>> > indicates that the friction module is
>>> missing a symbol for
>>> > pylith::friction::SlipWeakeningTimeStable.
>>> This was added in
>>> > v1.9, so
>>> > either the module or pylith library
>>> didn't build properly or
>>> > your
>>> > environment when you run the examples
>>> is finding the pylith
>>> > library from
>>> > v1.8.
>>> >
>>> > Run "ldd
>>> > /data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/_frictionmodule.so".
>>> >
>>> > If it lists libpylith.so from v1.8,
>>> then you need to fix
>>> > your
>>> > environment (check it against the
>>> variables from setup.sh).
>>> > If it shows
>>> > libpylith.so from v1.9, then your
>>> pylith build has a
>>> > problem. Check the
>>> > python unit tests again.
>>> >
>>> > Brad
>>> >
>>> > On 9/2/13 6:27 PM, Birendra jha
>>> wrote:
>>> > > Brad
>>> > >
>>> > > I agree something is wrong with
>>> my installation.
>>> > However, all the tests passed when I
>>> built pylith using the
>>> > installer.
>>> > > Here is the result of running
>>> nemesis:
>>> > >
>>> > > [bjha at login refined]$ nemesis
>>> > > Python 2.7.2 (default, Jul 12
>>> 2011, 10:24:30)
>>> > > [GCC 4.6.0 20110530 (Red Hat
>>> 4.6.0-9)] on linux2
>>> > > Type "help", "copyright",
>>> "credits" or "license" for
>>> > more information.
>>> > >>>> import
>>> pylith.faults.FaultCohesiveDyn
>>> > > Traceback (most recent call
>>> last):
>>> > > File
>>> "<stdin>", line 1, in
>>> > <module>
>>> > > File
>>> > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py",
>>> > line 34, in <module>
>>> > > class
>>> > FaultCohesiveDyn(FaultCohesive,
>>> Integrator,
>>> > ModuleFaultCohesiveDyn):
>>> > > File
>>> > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py",
>>> > line 75, in FaultCohesiveDyn
>>> > > from
>>> pylith.friction.StaticFriction
>>> > import StaticFriction
>>> > > File
>>> > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/StaticFriction.py",
>>> > line 26, in <module>
>>> > > from friction
>>> import StaticFriction
>>> > as ModuleStaticFriction
>>> > > File
>>> > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/friction.py",
>>> > line 26, in <module>
>>> > > _friction =
>>> swig_import_helper()
>>> > > File
>>> > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/friction.py",
>>> > line 22, in swig_import_helper
>>> > > _mod =
>>> imp.load_module('_friction',
>>> > fp, pathname, description)
>>> > > ImportError:
>>> > /data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pylith/friction/_frictionmodule.so:
>>> > undefined symbol:
>>> > _ZN6pylith8friction23SlipWeakeningTimeStableC1Ev
>>> > >>>>
>>> pylith.faults.FaultCohesiveDyn.__file__
>>> > > Traceback (most recent call
>>> last):
>>> > > File
>>> "<stdin>", line 1, in
>>> > <module>
>>> > > NameError: name 'pylith' is not
>>> defined
>>> > >>>>
>>> > >
>>> > > I checked PATH, PYTHONPATH and
>>> they are exclusively
>>> > pointing to Pylith-1.9.0, not
>>> Pylith-1.8.0.
>>> > >
>>> > > What do you suggest?
>>> > > Birendra
>>> > >
>>> --------------------------------------------
>>> > > On Tue, 9/3/13, Brad Aagaard
>>> <baagaard at usgs.gov>
>>> > wrote:
>>> > >
>>> > > Subject: Re:
>>> [CIG-SHORT] Not able to
>>> > run dynamic fault (step11) with
>>> Pylith-1.9.0 installed from
>>> > source
>>> > > To: cig-short at geodynamics.org
>>> > > Date: Tuesday,
>>> September 3, 2013, 2:29
>>> > AM
>>> > >
>>> > > Birendra,
>>> > >
>>> > > I don't find any
>>> problems with
>>> > examples/3d/hex8/step11. It
>>> > > runs fine for
>>> > > me using the
>>> binary and building from
>>> > source. My guess is
>>> > > that something
>>> > > is wrong with
>>> your installation. Did
>>> > you wipe out all of the
>>> > > old PyLith
>>> > > stuff in your
>>> PATH, PYTHONPATH, etc or
>>> > at least adjust your
>>> > > PATH,
>>> > > PYTHONPATH, etc
>>> so that they only see
>>> > v1.9.0? Did all of the
>>> > > tests pass
>>> > > when you built
>>> pylith using the
>>> > installer?
>>> > >
>>> > > What happens
>>> when you do the
>>> > following?
>>> > > nemesis
>>> > > import
>>> pylith.faults.FaultCohesiveDyn
>>> > > pylith.faults.FaultCohesiveDyn.__file__
>>> > >
>>> > > You can also try
>>> running
>>> > > pylithinfo
>>> --verbose step11.cfg
>>> > >
>>> > > The output will
>>> be written to
>>> > pylith_parameters.txt. It will
>>> > > show you
>>> > > where every
>>> parameter is set. You
>>> > would first need to fix
>>> > > any validation
>>> > > errors to get
>>> this far, because those
>>> > are tripped before the
>>> > > parameters
>>> > > can be written.
>>> > >
>>> > > Regards,
>>> > > Brad
>>> > >
>>> > >
>>> > > On 9/1/13 10:26
>>> PM, Birendra jha
>>> > wrote:
>>> > > > Hi Pylith
>>> developers
>>> > > >
>>> > > > I installed
>>> Pylith-1.9.0 using
>>> > the installer on the
>>> > > pylith website.
>>> Installation was
>>> > successful with no error
>>> > > messages except
>>> in the beginning when
>>> > I ran configure I got
>>> > > a message about
>>> existing software:
>>> > > >
>>> > > > WARNING:
>>> Existing version of HDF5
>>> > installed. Found
>>> > > /usr/bin/h5dump
>>> > > > WARNING:
>>> Existing version of
>>> > NetCDF installed. Found
>>> > > /usr/bin/ncdump
>>> > > >
>>> > > > configure:
>>> error: "Configure
>>> > failed due to conflict
>>> > > with existing
>>> software. Existing
>>> > software may interfere with
>>> > > proper
>>> installation of PyLith, may be
>>> > configured incorrectly
>>> > > for use with
>>> PyLith, or may have been
>>> > built with
>>> > > incompatible
>>> compilers. Remove
>>> > existing software
>>> > > (RECOMMENDED) or
>>> reconfigure with
>>> > --enable-force-install to
>>> > > override error
>>> message. "
>>> > > >
>>> > > > As per
>>> suggestion, I reran
>>> > configure with
>>> > > --enable-force-install
>>> option, and it
>>> > finished successfully
>>> > > along with
>>> 'make'.
>>> > > >
>>> > > > I am able
>>> to run successfully all
>>> > examples e.g. step01,
>>> > > step06 except
>>> examples with dynamic
>>> > fault e.g. step11:
>>> > > >
>>> > > > [bjha at login
>>> hex8]$ pylith
>>> > step11.cfg
>>> > > > Traceback
>>> (most recent call
>>> > last):
>>> > > >
>>> File
>>> > "/data/bjha/pylith-1.9.0/bin/pylith",
>>> > > line 39, in
>>> <module>
>>> > > >
>>> > start(applicationClass=PyLithApp)
>>> > > >
>>> File
>>> > > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/__init__.py",
>>> > > line 41, in
>>> start
>>> > > >
>>> > shell.run(**kwds)
>>> > > >
>>> File
>>> > > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/Shell.py",
>>> > > line 125, in
>>> run
>>> > > >
>>> > app.applyConfiguration(context)
>>> > > >
>>> File
>>> > > "/data/bjha/pylith-1.9.0/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventory/Configurable.py",
>>> > > line 84, in
>>> applyConfiguration
>>> > > >
>>> raise
>>> > ValueError("%s\nBacktrace -
>>> > > Component %s" %
>>> (err.message,
>>> > aliases))
>>> > > > ValueError:
>>> Error while
>>> > configuring spatial database
>>> > > reader
>>> (simpleioascii, iohandler):
>>> > > > Filename
>>> for spatial database not
>>> > specified.
>>> > > > Backtrace -
>>> Component
>>> > simpleioascii, iohandler
>>> > > > Backtrace -
>>> Component simpledb,
>>> > slip
>>> > > > Backtrace -
>>> Component stepslipfn,
>>> > slip_function
>>> > > > Backtrace -
>>> Component eqkinsrc,
>>> > rupture
>>> > > > Backtrace -
>>> Component
>>> > singlerupture, eq_srcs
>>> > > > Backtrace -
>>> Component
>>> > faultcohesivekin, fault
>>> > > > Backtrace -
>>> Component interfaces
>>> > > > Backtrace -
>>> Component
>>> > timedependent, problem
>>> > > > Backtrace -
>>> Component pylithapp
>>> > > >
>>> > > > Why is it
>>> saying faultcohesivekin
>>> > when it is
>>> > > FaultCohesiveDyn
>>> in the step11.cfg? I
>>> > am able to run this in
>>> > > my Pylith-1.8.0
>>> copy.
>>> > > > Please
>>> help.
>>> > > >
>>> > > > Thanks and
>>> regards
>>> > > > Birendra
>>> > > >
>>> > > >
>>> > _______________________________________________
>>> > > > CIG-SHORT
>>> mailing list
>>> > > > CIG-SHORT at geodynamics.org
>>> > > > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>> > > >
>>> > >
>>> > > _______________________________________________
>>> > > CIG-SHORT
>>> mailing list
>>> > > CIG-SHORT at geodynamics.org
>>> > > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>> > >
>>> > >
>>> _______________________________________________
>>> > > CIG-SHORT mailing list
>>> > > CIG-SHORT at geodynamics.org
>>> > > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>> > >
>>> >
>>> > _______________________________________________
>>> > CIG-SHORT mailing list
>>> > CIG-SHORT at geodynamics.org
>>> > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>> >
>>> > _______________________________________________
>>> > CIG-SHORT mailing list
>>> > CIG-SHORT at geodynamics.org
>>> > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>> >
>>>
>>> _______________________________________________
>>> CIG-SHORT mailing list
>>> CIG-SHORT at geodynamics.org
>>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>>
>>> _______________________________________________
>>> CIG-SHORT mailing list
>>> CIG-SHORT at geodynamics.org
>>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>>
>>
>> _______________________________________________
>> CIG-SHORT mailing list
>> CIG-SHORT at geodynamics.org
>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>
> Charles A. Williams
> Scientist
> GNS Science
> 1 Fairway Drive, Avalon
> PO Box 30368
> Lower Hutt 5040
> New Zealand
> ph (office): 0064-4570-4566
> fax (office): 0064-4570-4600
> C.Williams at gns.cri.nz
>
>
>
>
> _______________________________________________
> CIG-SHORT mailing list
> CIG-SHORT at geodynamics.org
> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>
More information about the CIG-SHORT
mailing list