[CIG-SHORT] Pylith install error

[Birendra jha]

Hi

The configuration is such that I am installing it in my home directory on the head node of a cluster, but compiling on one of the compute nodes. I am not compiling on the head node because I get C compiler error during the configure phase. 
The headnode and the compute node have different versions of libgfortran (so.1 and so.3). Here are the steps I took:

qrsh -l hostname=gpu-0-31   (ignore gpu in the name, I am not using gpu stuff)
module add openmpi            (I do this because there is no openmpi on this gpu node, only on headnode)
cd /share/home/bjha/build/pylith-1.9.0/
../../src/pylith/pylith-installer-1.9.0-0/configure --prefix=/share/home/bjha/pylith-1.9.0
source setup.sh                   (everything ok so far)
make
libgfortran.so.1, needed by /share/apps/openmpi/openmpi-1.3.3/lib/libmpi_f90.so, not found (try using -rpath or -rpath-link)

Is it possible to add the libgfortran.so.1 path from the head node while compiling on the gpu node? 

Or, is the only option is to install openmpi (a newer version that goes with libgfortran.so.3) on the compute node? This might take a while because it depends on our system admin.

thanks
Birendra

--------------------------------------------
On Wed, 9/11/13, Brad Aagaard <baagaard at usgs.gov> wrote:

 Subject: Re: [CIG-SHORT] Pylith install error
 To: cig-short at geodynamics.org
 Date: Wednesday, September 11, 2013, 9:38 AM
 
 Birendra,
 
 Check to make sure than mpicc, mpicxx, and mpif90 are
 pointing to the 
 correct compilers using mpicc -show, mpicxx -show, and
 mpif90 -show. If 
 a consistent set of compilers and paths are being used for
 MPI and your 
 environment, you should not get an error like this.
 
 Regards,
 Brad
 
 
 
 On 9/10/13 8:32 PM, Birendra jha wrote:
 > Hi
 >
 > I am installing pylith-1.9.0 from the installer on a
 different computer and I got following error during the make
 step:
 >
 > Making all in fortran
 > make[5]: Entering directory
 `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran'
 > Making all in src
 > make[6]: Entering directory
 `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran/src'
 >    FC     H5test_kind.o
 >    FCLD   H5test_kind
 > /usr/bin/ld: warning: libgfortran.so.1, needed by
 /share/apps/openmpi/openmpi-1.3.3/lib/libmpi_f90.so, not
 found (try using -rpath or -rpath-link)
 > ./H5test_kind > H5fortran_detect.f90
 > ./H5test_kind: error while loading shared libraries:
 libgfortran.so.1: cannot open shared object file: No such
 file or directory
 > make[6]: *** [H5fortran_detect.f90] Error 127
 > make[6]: Leaving directory
 `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran/src'
 > make[5]: *** [all-recursive] Error 1
 > make[5]: Leaving directory
 `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran'
 > make[4]: *** [all-recursive] Error 1
 > make[4]: Leaving directory
 `/share/home/bjha/build/pylith-1.9.0/hdf5-build'
 > make[3]: *** [hdf5] Error 2
 > make[3]: Leaving directory
 `/share/home/bjha/build/pylith-1.9.0'
 > make[2]: *** [installed_hdf5] Error 2
 > make[2]: Leaving directory
 `/share/home/bjha/build/pylith-1.9.0'
 > make[1]: *** [installed_netcdf] Error 2
 > make[1]: Leaving directory
 `/share/home/bjha/build/pylith-1.9.0'
 > make: *** [installed_pylith] Error 2
 >
 > I checked that the computer has libgfortran.so.1 in
 both /usr/lib and /usr/lib64.
 >
 > Is it a path issue?
 >
 > Thanks and regards
 > Birendra
 > _______________________________________________
 > CIG-SHORT mailing list
 > CIG-SHORT at geodynamics.org
 > http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
 >
 
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