[CIG-SHORT] Pylith install error

[Matthew Knepley]

Did you try setting LD_LIBRARY_PATH?

   Matt
On Sep 11, 2013 10:40 AM, "Birendra jha" <bjha7333 at yahoo.com> wrote:

> Hi
>
> The configuration is such that I am installing it in my home directory on
> the head node of a cluster, but compiling on one of the compute nodes. I am
> not compiling on the head node because I get C compiler error during the
> configure phase.
> The headnode and the compute node have different versions of libgfortran
> (so.1 and so.3). Here are the steps I took:
>
> qrsh -l hostname=gpu-0-31   (ignore gpu in the name, I am not using gpu
> stuff)
> module add openmpi            (I do this because there is no openmpi on
> this gpu node, only on headnode)
> cd /share/home/bjha/build/pylith-1.9.0/
> ../../src/pylith/pylith-installer-1.9.0-0/configure
> --prefix=/share/home/bjha/pylith-1.9.0
> source setup.sh                   (everything ok so far)
> make
> libgfortran.so.1, needed by
> /share/apps/openmpi/openmpi-1.3.3/lib/libmpi_f90.so, not found (try using
> -rpath or -rpath-link)
>
> Is it possible to add the libgfortran.so.1 path from the head node while
> compiling on the gpu node?
>
> Or, is the only option is to install openmpi (a newer version that goes
> with libgfortran.so.3) on the compute node? This might take a while because
> it depends on our system admin.
>
> thanks
> Birendra
>
> --------------------------------------------
> On Wed, 9/11/13, Brad Aagaard <baagaard at usgs.gov> wrote:
>
>  Subject: Re: [CIG-SHORT] Pylith install error
>  To: cig-short at geodynamics.org
>  Date: Wednesday, September 11, 2013, 9:38 AM
>
>  Birendra,
>
>  Check to make sure than mpicc, mpicxx, and mpif90 are
>  pointing to the
>  correct compilers using mpicc -show, mpicxx -show, and
>  mpif90 -show. If
>  a consistent set of compilers and paths are being used for
>  MPI and your
>  environment, you should not get an error like this.
>
>  Regards,
>  Brad
>
>
>
>  On 9/10/13 8:32 PM, Birendra jha wrote:
>  > Hi
>  >
>  > I am installing pylith-1.9.0 from the installer on a
>  different computer and I got following error during the make
>  step:
>  >
>  > Making all in fortran
>  > make[5]: Entering directory
>  `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran'
>  > Making all in src
>  > make[6]: Entering directory
>  `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran/src'
>  >    FC     H5test_kind.o
>  >    FCLD   H5test_kind
>  > /usr/bin/ld: warning: libgfortran.so.1, needed by
>  /share/apps/openmpi/openmpi-1.3.3/lib/libmpi_f90.so, not
>  found (try using -rpath or -rpath-link)
>  > ./H5test_kind > H5fortran_detect.f90
>  > ./H5test_kind: error while loading shared libraries:
>  libgfortran.so.1: cannot open shared object file: No such
>  file or directory
>  > make[6]: *** [H5fortran_detect.f90] Error 127
>  > make[6]: Leaving directory
>  `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran/src'
>  > make[5]: *** [all-recursive] Error 1
>  > make[5]: Leaving directory
>  `/share/home/bjha/build/pylith-1.9.0/hdf5-build/fortran'
>  > make[4]: *** [all-recursive] Error 1
>  > make[4]: Leaving directory
>  `/share/home/bjha/build/pylith-1.9.0/hdf5-build'
>  > make[3]: *** [hdf5] Error 2
>  > make[3]: Leaving directory
>  `/share/home/bjha/build/pylith-1.9.0'
>  > make[2]: *** [installed_hdf5] Error 2
>  > make[2]: Leaving directory
>  `/share/home/bjha/build/pylith-1.9.0'
>  > make[1]: *** [installed_netcdf] Error 2
>  > make[1]: Leaving directory
>  `/share/home/bjha/build/pylith-1.9.0'
>  > make: *** [installed_pylith] Error 2
>  >
>  > I checked that the computer has libgfortran.so.1 in
>  both /usr/lib and /usr/lib64.
>  >
>  > Is it a path issue?
>  >
>  > Thanks and regards
>  > Birendra
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