[CIG-SHORT] Error Installing Pylith on Cluster

[Brad Aagaard]

Xiao,

You need to:

1. Load the required modules (usually you do this in your shell setup).
2. Run the PyLith installer as normal (configure, setup, make).
3. When you get the error message regarding ifort, go to the 
netcdf-build directory and edit the libtool file. Go into the Fortran 
sections and edit the lines shown. You may need your sysadmin's help.
4. Follow the instructions in the INSTALL file:

In the netcdf build directory do "make clean" and then "make" to
regenerate the object files with these flags. After the build
succeeds, run "touch installed_netcdf" in the top-level directory.

5. Continue the PyLith installer build by running make in the top-level 
directory, as you did in step 2.

Regards,
Brad


On 12/12/2014 11:38 AM, Xiao Ma wrote:
> Hi Brad,
> I am confused about these two commands, where should I put in the building
> procedure, should it be after *./configure CC=icc CXX=icpc FC=ifort
> --with-make-threads=2 ?*
> *Thanks ,*
>
> *Xiao*
>
>> * --enable-force-install --prefix= …*
>
> *******************************************
> ----------------------------------------------------------------------
> netcdf and HDF5 Fortran libraries fail to link with ifort
> ----------------------------------------------------------------------
>
> This can be associated with bugs in libtool. Check to make sure the
> "pic_flag" and "wl" parameters are set in the Fortan sections. They
> should be set via something like:
>
>    pic_flag=" -fPIC"
>    wl="-Wl,"
> *******************************
>
>
>
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