[CIG-SHORT] Pylith running on cluster

Xiao Ma xiaoma5 at illinois.edu
Mon Dec 15 13:31:35 PST 2014

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Hi,
I have submitted a job on the cluster , and get the following error
"stderr" file,
**********************

----------------------------------------

Begin Torque Prologue (Mon Dec 15 15:00:25 2014)

Job ID:           1820048.cc-mgmt1.campuscluster.illinois.edu

Username:         xiaoma5

Group:            cee_elbanna

Job Name:         YOURJOBNAME

Limits:           ncpus=1,neednodes=2:ppn=8,nodes=2:ppn=8,walltime=00:40:00

Job Queue:        secondary

Account:          cee_elbanna

Nodes:            taub087 taub091

End Torque Prologue

----------------------------------------

--------------------------------------------------------------------------

An MPI process has executed an operation involving a call to the

"fork()" system call to create a child process.  Open MPI is currently

operating in a condition that could result in memory corruption or

other system errors; your MPI job may hang, crash, or produce silent

data corruption.  The use of fork() (or system() or other calls that

create child processes) is strongly discouraged.



The process that invoked fork was:



  Local host:          taub091 (PID 3206)

  MPI_COMM_WORLD rank: 10



If you are *absolutely sure* that your application will successfully

and correctly survive a call to fork(), you may disable this warning

by setting the mpi_warn_on_fork MCA parameter to 0.

--------------------------------------------------------------------------

[taub087:31682] 15 more processes have sent help message
help-mpi-runtime.txt / mpi_init:warn-fork

[taub087:31682] Set MCA parameter "orte_base_help_aggregate" to 0 to see
all help / error messages

WARNING: No initial state given for friction model 'WARNING: No initial
state given for friction model 'Slip weakening'. Using default value of
zero.

WARNING: No initial state given for friction model 'Slip weakening'. Using
default value of zero.

Slip weakening'. Using default value of zero.WARNING: No initial state
given for friction model 'Slip weakening'. Using default value of zero.



WARNING: No initial state given for friction model 'Slip weakening'. Using
default value of zero.

WARNING: No initial state given for friction model 'WARNING: No initial
state given for friction model 'Slip weakening'. Using default value of
zero.

WARNING: No initial state given for friction model 'Slip weakening'. Using
default value of zero.

Slip weakening'. Using default value of zero.

WARNING: No initial state given for friction model 'Slip weakening'. Using
default value of zero.

WARNING: No initial state given for friction model 'WARNING: No initial
state given for friction model 'WARNING: No initial state given for
friction model 'Slip weakening'. Using default value of zero.

Slip weakening'. Using default value of zero.Slip weakening'. Using default
value of zero.



WARNING: No initial state given for friction model 'WARNING: No initial
state given for friction model 'Slip weakening'. Using default value of
zero.

Slip weakening'. Using default value of zero.WARNING: No initial state
given for friction model 'Slip weakening'. Using default value of zero.



WARNING: No initial state given for friction model 'Slip weakening'. Using
default value of zero.

mpirun: abort is already in progress...hit ctrl-c again to forcibly
terminate



mpirun: killing job...



Global symbol "$systemCoreCount" requires explicit package name at
/var/spool/torque/mom_priv/epilogue line 450.

Global symbol "$systemCoreCount" requires explicit package name at
/var/spool/torque/mom_priv/epilogue line 456.

Execution of /var/spool/torque/mom_priv/epilogue aborted due to compilation
errors.

*****************************

The log file :

******************************
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/utils/PetscManager.py:64:initialize
 -- petsc(info)
 -- Initialized PETSc.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [5] CPU time: 00:00:06, Memory usage: 65.77 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [4] CPU time: 00:00:06, Memory usage: 65.77 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [6] CPU time: 00:00:06, Memory usage: 65.77 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [7] CPU time: 00:00:06, Memory usage: 65.77 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [3] CPU time: 00:00:06, Memory usage: 65.82 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [0] CPU time: 00:00:06, Memory usage: 67.78 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [1] CPU time: 00:00:06, Memory usage: 65.83 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [2] CPU time: 00:00:06, Memory usage: 65.77 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [15] CPU time: 00:00:01, Memory usage: 65.73 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [8] CPU time: 00:00:01, Memory usage: 65.74 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [9] CPU time: 00:00:01, Memory usage: 67.73 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [10] CPU time: 00:00:01, Memory usage: 65.74 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [11] CPU time: 00:00:01, Memory usage: 65.74 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [12] CPU time: 00:00:01, Memory usage: 65.73 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [13] CPU time: 00:00:01, Memory usage: 65.74 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
 -- pylithapp(debug)
 -- [14] CPU time: 00:00:01, Memory usage: 65.74 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/meshio/MeshIOObj.py:55:read
 -- meshiocubit(info)
 -- Reading finite-element mesh
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:158:<unknown>
 -- meshiocubit(info)
 -- Reading 4805201 vertices.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:217:<unknown>
 -- meshiocubit(info)
 -- Reading 4800000 cells in 1 blocks.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:281:<unknown>
 -- meshiocubit(info)
 -- Found 5 node sets.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
 -- meshiocubit(info)
 -- Reading node set 'fault' with id 10 containing 4001 nodes.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
 -- meshiocubit(info)
 -- Reading node set 'face_xpos' with id 20 containing 1201 nodes.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
 -- meshiocubit(info)
 -- Reading node set 'face_xneg' with id 21 containing 1201 nodes.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
 -- meshiocubit(info)
 -- Reading node set 'face_yneg' with id 33 containing 4001 nodes.
 >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
 -- meshiocubit(info)
 -- Reading node set 'face_ypos' with id 43 containing 4001 nodes.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 374.80 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 374.83 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [3] CPU time: 00:00:51, Memory usage: 374.89 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 376.67 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 374.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [3] CPU time: 00:00:51, Memory usage: 374.93 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 376.67 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 374.51 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [2] CPU time: 00:00:54, Memory usage: 375.78 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 371.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 378.39 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [5] CPU time: 00:00:54, Memory usage: 373.82 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [4] CPU time: 00:00:54, Memory usage: 371.49 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 371.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 378.44 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [2] CPU time: 00:00:54, Memory usage: 375.78 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 375.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [11] CPU time: 00:00:44, Memory usage: 378.85 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 378.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 373.93 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [1] CPU time: 00:00:54, Memory usage: 374.65 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [4] CPU time: 00:00:54, Memory usage: 371.51 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 373.93 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 375.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [5] CPU time: 00:00:54, Memory usage: 373.86 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [11] CPU time: 00:00:44, Memory usage: 378.89 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 378.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 374.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [1] CPU time: 00:00:54, Memory usage: 374.65 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 374.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
 -- pylithapp(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 396.18 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:92:preinitialize
 -- timedependent(info)
 -- Pre-initializing problem.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:360:_setupMaterials
 -- explicit(info)
 -- Pre-initializing materials.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
 -- explicit(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 396.24 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
 -- fiatlagrange(info)
 -- Cell geometry:
 -- <pylith.feassemble.CellGeometry.GeometryQuad2D; proxy of <Swig Object
of type 'pylith::feassemble::GeometryQuad2D *' at 0x7f712dfd1ab0> >
 -- Vertices:
 -- [[-1. -1.]
 [ 1. -1.]
 [ 1.  1.]
 [-1.  1.]]
 -- Quad pts:
 -- [[-0.57735027 -0.57735027]
 [ 0.57735027 -0.57735027]
 [-0.57735027  0.57735027]
 [ 0.57735027  0.57735027]]
 -- Quad wts:
 -- [ 1.  1.  1.  1.]
 -- Basis fns @ quad pts ):
 -- [[ 0.62200847  0.16666667  0.0446582   0.16666667]
 [ 0.16666667  0.62200847  0.16666667  0.0446582 ]
 [ 0.16666667  0.0446582   0.16666667  0.62200847]
 [ 0.0446582   0.16666667  0.62200847  0.16666667]]
 -- Basis fn derivatives @ quad pts:
 -- [[[-0.39433757 -0.39433757]
  [ 0.39433757 -0.10566243]
  [ 0.10566243  0.10566243]
  [-0.10566243  0.39433757]]

 [[-0.39433757 -0.10566243]
  [ 0.39433757 -0.39433757]
  [ 0.10566243  0.39433757]
  [-0.10566243  0.10566243]]

 [[-0.10566243 -0.39433757]
  [ 0.10566243 -0.10566243]
  [ 0.39433757  0.10566243]
  [-0.39433757  0.39433757]]

 [[-0.10566243 -0.10566243]
  [ 0.10566243 -0.39433757]
  [ 0.39433757  0.39433757]
  [-0.39433757  0.10566243]]]
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 355.10 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 353.37 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 352.26 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 352.16 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 354.18 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [11] CPU time: 00:00:44, Memory usage: 354.10 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 354.18 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 352.27 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [11] CPU time: 00:00:44, Memory usage: 354.10 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 352.16 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 354.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 353.38 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 354.00 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 355.11 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 354.31 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 354.00 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [2] CPU time: 00:00:55, Memory usage: 354.80 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [3] CPU time: 00:00:52, Memory usage: 354.26 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 352.79 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 352.79 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [1] CPU time: 00:00:55, Memory usage: 352.80 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [5] CPU time: 00:00:55, Memory usage: 353.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 370.36 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials
 -- explicit(info)
 -- Added elasticity integrator for material 'Elastic material'.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:389:_setupBC
 -- explicit(info)
 -- Pre-initializing boundary conditions.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 352.80 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [3] CPU time: 00:00:52, Memory usage: 354.26 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
 -- explicit(debug)
 -- [4] CPU time: 00:00:54, Memory usage: 351.05 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [1] CPU time: 00:00:55, Memory usage: 352.80 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 352.80 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [2] CPU time: 00:00:55, Memory usage: 354.81 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 370.37 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [5] CPU time: 00:00:55, Memory usage: 353.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
 -- fiatlagrange(info)
 -- Cell geometry:
 -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca33900> >
 -- Vertices:
 -- [[-1.]
 [ 1.]]
 -- Quad pts:
 -- [[-0.57735027]
 [ 0.57735027]]
 -- Quad wts:
 -- [ 1.  1.]
 -- Basis fns @ quad pts ):
 -- [[ 0.78867513  0.21132487]
 [ 0.21132487  0.78867513]]
 -- Basis fn derivatives @ quad pts:
 -- [[[-0.5]
  [ 0.5]]

 [[-0.5]
  [ 0.5]]]
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
 -- explicit(debug)
 -- [4] CPU time: 00:00:54, Memory usage: 351.06 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
 -- explicit(info)
 -- Added boundary condition 'face_xpos' as an integrator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
 -- fiatlagrange(info)
 -- Cell geometry:
 -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e0c0> >
 -- Vertices:
 -- [[-1.]
 [ 1.]]
 -- Quad pts:
 -- [[-0.57735027]
 [ 0.57735027]]
 -- Quad wts:
 -- [ 1.  1.]
 -- Basis fns @ quad pts ):
 -- [[ 0.78867513  0.21132487]
 [ 0.21132487  0.78867513]]
 -- Basis fn derivatives @ quad pts:
 -- [[[-0.5]
  [ 0.5]]

 [[-0.5]
  [ 0.5]]]
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
 -- explicit(info)
 -- Added boundary condition 'face_xneg' as an integrator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
 -- fiatlagrange(info)
 -- Cell geometry:
 -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e120> >
 -- Vertices:
 -- [[-1.]
 [ 1.]]
 -- Quad pts:
 -- [[-0.57735027]
 [ 0.57735027]]
 -- Quad wts:
 -- [ 1.  1.]
 -- Basis fns @ quad pts ):
 -- [[ 0.78867513  0.21132487]
 [ 0.21132487  0.78867513]]
 -- Basis fn derivatives @ quad pts:
 -- [[[-0.5]
  [ 0.5]]

 [[-0.5]
  [ 0.5]]]
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
 -- explicit(info)
 -- Added boundary condition 'face_yneg' as an integrator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
 -- fiatlagrange(info)
 -- Cell geometry:
 -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e060> >
 -- Vertices:
 -- [[-1.]
 [ 1.]]
 -- Quad pts:
 -- [[-0.57735027]
 [ 0.57735027]]
 -- Quad wts:
 -- [ 1.  1.]
 -- Basis fns @ quad pts ):
 -- [[ 0.78867513  0.21132487]
 [ 0.21132487  0.78867513]]
 -- Basis fn derivatives @ quad pts:
 -- [[[-0.5]
  [ 0.5]]

 [[-0.5]
  [ 0.5]]]
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
 -- explicit(info)
 -- Added boundary condition 'face_ypos' as an integrator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [5] CPU time: 00:00:55, Memory usage: 353.70 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [2] CPU time: 00:00:55, Memory usage: 355.11 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 355.43 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 352.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 354.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 354.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [11] CPU time: 00:00:45, Memory usage: 354.39 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 352.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [1] CPU time: 00:00:55, Memory usage: 353.06 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [3] CPU time: 00:00:52, Memory usage: 354.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 353.85 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 354.57 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 353.23 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [4] CPU time: 00:00:55, Memory usage: 351.50 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 370.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:425:_setupInterfaces
 -- explicit(info)
 -- Pre-initializing interior interfaces.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [5] CPU time: 00:00:55, Memory usage: 353.75 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [2] CPU time: 00:00:55, Memory usage: 355.17 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [3] CPU time: 00:00:52, Memory usage: 354.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py:115:preinitialize
 -- faultcohesivedyn(info)
 -- Pre-initializing fault 'fault'.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [2] CPU time: 00:00:55, Memory usage: 355.18 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [4] CPU time: 00:00:55, Memory usage: 351.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [5] CPU time: 00:00:55, Memory usage: 353.75 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
 -- fiatlagrange(info)
 -- Cell geometry:
 -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e930> >
 -- Vertices:
 -- [[-1.]
 [ 1.]]
 -- Quad pts:
 -- [[-1.]
 [ 1.]]
 -- Quad wts:
 -- [ 1.  1.]
 -- Basis fns @ quad pts ):
 -- [[  1.00000000e+00  -3.49113100e-17]
 [ -3.49113100e-17   1.00000000e+00]]
 -- Basis fn derivatives @ quad pts:
 -- [[[-0.5]
  [ 0.5]]

 [[-0.5]
  [ 0.5]]]
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:434:_setupInterfaces
 -- explicit(info)
 -- Added interface condition 'fault' as an integrator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 354.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 352.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 354.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 353.92 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 355.50 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 352.67 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 353.29 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
 -- explicit(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 353.10 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [3] CPU time: 00:00:52, Memory usage: 354.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [1] CPU time: 00:00:55, Memory usage: 353.12 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [11] CPU time: 00:00:45, Memory usage: 354.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 354.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 370.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:162:preinitialize
 -- explicit(info)
 -- Pre-initializing output.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [8] CPU time: 00:00:49, Memory usage: 352.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [14] CPU time: 00:00:49, Memory usage: 354.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [12] CPU time: 00:00:49, Memory usage: 353.92 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [9] CPU time: 00:00:44, Memory usage: 355.50 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [13] CPU time: 00:00:49, Memory usage: 354.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [7] CPU time: 00:00:51, Memory usage: 353.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [1] CPU time: 00:00:55, Memory usage: 353.12 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [11] CPU time: 00:00:45, Memory usage: 354.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [15] CPU time: 00:00:49, Memory usage: 352.67 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [10] CPU time: 00:00:49, Memory usage: 354.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [4] CPU time: 00:00:55, Memory usage: 351.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [0] CPU time: 00:00:54, Memory usage: 370.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Problem.py:150:verifyConfiguration
 -- timedependent(info)
 -- Verifying compatibility of problem configuration.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
 -- explicit(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 353.16 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
 -- pylithapp(debug)
 -- [6] CPU time: 00:00:48, Memory usage: 353.16 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:117:initialize
 -- timedependent(info)
 -- Initializing problem.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [6] CPU time: 00:00:49, Memory usage: 353.23 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [0] CPU time: 00:00:55, Memory usage: 370.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:466:_initialize
 -- explicit(info)
 -- Initializing integrators.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [10] CPU time: 00:00:50, Memory usage: 354.71 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [15] CPU time: 00:00:50, Memory usage: 352.73 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [14] CPU time: 00:00:50, Memory usage: 354.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [1] CPU time: 00:00:56, Memory usage: 353.19 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [4] CPU time: 00:00:55, Memory usage: 351.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [11] CPU time: 00:00:45, Memory usage: 354.52 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [8] CPU time: 00:00:50, Memory usage: 352.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [13] CPU time: 00:00:50, Memory usage: 354.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [2] CPU time: 00:00:56, Memory usage: 355.25 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [5] CPU time: 00:00:56, Memory usage: 353.83 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [7] CPU time: 00:00:52, Memory usage: 353.37 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [9] CPU time: 00:00:45, Memory usage: 355.57 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [3] CPU time: 00:00:53, Memory usage: 354.68 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
 -- explicit(debug)
 -- [12] CPU time: 00:00:50, Memory usage: 353.99 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py:164:initialize
 -- faultcohesivedyn(info)
 -- Initializing fault 'fault'.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:03, Memory usage: 766.14 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [7] CPU time: 00:00:59, Memory usage: 760.97 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [15] CPU time: 00:00:57, Memory usage: 760.02 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [12] CPU time: 00:00:58, Memory usage: 761.34 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:03, Memory usage: 767.47 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [6] CPU time: 00:00:56, Memory usage: 766.79 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:00, Memory usage: 769.09 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [14] CPU time: 00:00:58, Memory usage: 769.04 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [9] CPU time: 00:00:51, Memory usage: 762.76 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:03, Memory usage: 768.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [10] CPU time: 00:00:57, Memory usage: 769.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:03, Memory usage: 768.13 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [8] CPU time: 00:00:57, Memory usage: 760.38 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [13] CPU time: 00:00:56, Memory usage: 769.06 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [11] CPU time: 00:00:53, Memory usage: 768.88 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:02, Memory usage: 777.84 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:475:_initialize
 -- explicit(info)
 -- Initializing constraints.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [6] CPU time: 00:00:56, Memory usage: 766.79 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:03, Memory usage: 766.14 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:00, Memory usage: 769.09 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [15] CPU time: 00:00:57, Memory usage: 760.02 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [12] CPU time: 00:00:58, Memory usage: 761.34 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:03, Memory usage: 768.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [14] CPU time: 00:00:58, Memory usage: 769.04 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [10] CPU time: 00:00:57, Memory usage: 769.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:03, Memory usage: 767.47 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [11] CPU time: 00:00:53, Memory usage: 768.88 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:02, Memory usage: 777.84 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:481:_initialize
 -- explicit(info)
 -- Setting up solution output.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [7] CPU time: 00:00:59, Memory usage: 760.97 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:03, Memory usage: 768.13 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [8] CPU time: 00:00:57, Memory usage: 760.38 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [9] CPU time: 00:00:51, Memory usage: 762.76 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
 -- explicit(debug)
 -- [13] CPU time: 00:00:56, Memory usage: 769.06 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:18, Memory usage: 766.72 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [6] CPU time: 00:01:12, Memory usage: 767.43 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:15, Memory usage: 769.67 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:18, Memory usage: 768.71 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [7] CPU time: 00:01:07, Memory usage: 761.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:10, Memory usage: 778.49 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:490:_initialize
 -- explicit(info)
 -- Creating solution field.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:18, Memory usage: 769.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [10] CPU time: 00:01:13, Memory usage: 769.86 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [11] CPU time: 00:01:08, Memory usage: 769.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [8] CPU time: 00:01:13, Memory usage: 761.04 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [9] CPU time: 00:01:06, Memory usage: 763.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [12] CPU time: 00:01:13, Memory usage: 762.00 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [13] CPU time: 00:01:12, Memory usage: 769.65 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [14] CPU time: 00:01:13, Memory usage: 769.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:18, Memory usage: 768.06 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
 -- explicit(debug)
 -- [15] CPU time: 00:01:12, Memory usage: 766.79 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:19, Memory usage: 971.25 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:19, Memory usage: 970.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [7] CPU time: 00:01:08, Memory usage: 963.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:16, Memory usage: 971.48 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [6] CPU time: 00:01:12, Memory usage: 969.39 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:19, Memory usage: 968.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:19, Memory usage: 969.87 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:10, Memory usage: 980.44 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:119:initialize
 -- explicit(info)
 -- Creating other fields.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [14] CPU time: 00:01:14, Memory usage: 971.47 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [10] CPU time: 00:01:13, Memory usage: 971.68 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [8] CPU time: 00:01:14, Memory usage: 962.99 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [9] CPU time: 00:01:07, Memory usage: 965.41 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [13] CPU time: 00:01:12, Memory usage: 971.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [15] CPU time: 00:01:13, Memory usage: 968.79 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [12] CPU time: 00:01:14, Memory usage: 963.97 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
 -- explicit(debug)
 -- [11] CPU time: 00:01:09, Memory usage: 971.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:14, Memory usage: 1769.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:22, Memory usage: 1757.33 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [13] CPU time: 00:01:16, Memory usage: 1760.21 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [15] CPU time: 00:01:16, Memory usage: 1758.09 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [7] CPU time: 00:01:11, Memory usage: 1752.93 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [6] CPU time: 00:01:16, Memory usage: 1758.56 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:19, Memory usage: 1760.36 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [10] CPU time: 00:01:17, Memory usage: 1760.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:22, Memory usage: 1758.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:22, Memory usage: 1759.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [11] CPU time: 00:01:12, Memory usage: 1760.14 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [12] CPU time: 00:01:17, Memory usage: 1753.07 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [8] CPU time: 00:01:17, Memory usage: 1752.03 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [9] CPU time: 00:01:10, Memory usage: 1754.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:22, Memory usage: 1760.35 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
 -- explicit(debug)
 -- [14] CPU time: 00:01:17, Memory usage: 1760.25 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:14, Memory usage: 1769.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:151:initialize
 -- explicit(info)
 -- Creating lumped Jacobian matrix.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:22, Memory usage: 1757.33 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [15] CPU time: 00:01:16, Memory usage: 1758.09 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [13] CPU time: 00:01:16, Memory usage: 1760.21 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [7] CPU time: 00:01:11, Memory usage: 1752.93 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [6] CPU time: 00:01:16, Memory usage: 1758.56 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:22, Memory usage: 1760.35 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:22, Memory usage: 1759.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [9] CPU time: 00:01:10, Memory usage: 1754.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [11] CPU time: 00:01:12, Memory usage: 1760.14 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [14] CPU time: 00:01:17, Memory usage: 1760.25 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [10] CPU time: 00:01:17, Memory usage: 1760.31 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [12] CPU time: 00:01:17, Memory usage: 1753.07 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [8] CPU time: 00:01:17, Memory usage: 1752.03 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:23, Memory usage: 1758.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:20, Memory usage: 1760.36 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [6] CPU time: 00:01:16, Memory usage: 1923.75 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:14, Memory usage: 1934.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:175:initialize
 -- explicit(info)
 -- Initializing solver.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [13] CPU time: 00:01:16, Memory usage: 1925.32 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [12] CPU time: 00:01:18, Memory usage: 1918.27 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [6] CPU time: 00:01:16, Memory usage: 1923.76 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [0] CPU time: 00:01:14, Memory usage: 1934.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [8] CPU time: 00:01:17, Memory usage: 1917.20 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [10] CPU time: 00:01:18, Memory usage: 1925.39 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [13] CPU time: 00:01:16, Memory usage: 1925.34 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [15] CPU time: 00:01:17, Memory usage: 1923.32 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [9] CPU time: 00:01:11, Memory usage: 1919.81 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [11] CPU time: 00:01:13, Memory usage: 1925.27 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [0] CPU time: 00:01:14, Memory usage: 1934.63 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:131:run
 -- timedependent(info)
 -- Solving problem.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:176:run
 -- timedependent(info)
 -- Main time loop, current time is t=0*s
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [6] CPU time: 00:01:16, Memory usage: 1923.76 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:23, Memory usage: 1922.44 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:23, Memory usage: 1925.53 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:23, Memory usage: 1924.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [14] CPU time: 00:01:18, Memory usage: 1925.37 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [12] CPU time: 00:01:18, Memory usage: 1918.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:20, Memory usage: 1925.45 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [11] CPU time: 00:01:13, Memory usage: 1925.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [8] CPU time: 00:01:17, Memory usage: 1917.21 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:23, Memory usage: 1923.65 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [13] CPU time: 00:01:16, Memory usage: 1925.34 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [14] CPU time: 00:01:18, Memory usage: 1925.38 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [15] CPU time: 00:01:17, Memory usage: 1923.34 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [9] CPU time: 00:01:11, Memory usage: 1919.82 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [2] CPU time: 00:01:23, Memory usage: 1925.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [5] CPU time: 00:01:23, Memory usage: 1924.43 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
 -- explicit(debug)
 -- [7] CPU time: 00:01:12, Memory usage: 1918.14 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [3] CPU time: 00:01:20, Memory usage: 1925.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [10] CPU time: 00:01:18, Memory usage: 1925.41 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [11] CPU time: 00:01:13, Memory usage: 1925.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [12] CPU time: 00:01:18, Memory usage: 1918.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [8] CPU time: 00:01:17, Memory usage: 1917.21 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [5] CPU time: 00:01:23, Memory usage: 1924.43 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [2] CPU time: 00:01:23, Memory usage: 1925.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [4] CPU time: 00:01:23, Memory usage: 1922.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [7] CPU time: 00:01:12, Memory usage: 1918.16 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [9] CPU time: 00:01:11, Memory usage: 1919.82 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
 -- explicit(debug)
 -- [1] CPU time: 00:01:23, Memory usage: 1923.66 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [15] CPU time: 00:01:17, Memory usage: 1923.34 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [10] CPU time: 00:01:18, Memory usage: 1925.41 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [14] CPU time: 00:01:18, Memory usage: 1925.38 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [7] CPU time: 00:01:12, Memory usage: 1918.16 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [3] CPU time: 00:01:20, Memory usage: 1925.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [1] CPU time: 00:01:23, Memory usage: 1923.66 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
 -- pylithapp(debug)
 -- [4] CPU time: 00:01:23, Memory usage: 1922.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:187:run
 -- timedependent(info)
 -- Preparing to advance solution from time t=0*s to t=0.001*s.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [0] CPU time: 00:01:15, Memory usage: 1934.71 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:327:_reformJacobian
 -- explicit(info)
 -- Integrating Jacobian operator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [4] CPU time: 00:01:23, Memory usage: 1922.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [6] CPU time: 00:01:17, Memory usage: 1923.84 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [7] CPU time: 00:01:12, Memory usage: 1918.24 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [5] CPU time: 00:01:23, Memory usage: 1924.52 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [3] CPU time: 00:01:21, Memory usage: 1925.54 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [2] CPU time: 00:01:23, Memory usage: 1925.62 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [14] CPU time: 00:01:18, Memory usage: 1925.47 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [8] CPU time: 00:01:18, Memory usage: 1917.30 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [12] CPU time: 00:01:18, Memory usage: 1918.37 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [13] CPU time: 00:01:17, Memory usage: 1925.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [10] CPU time: 00:01:18, Memory usage: 1925.50 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [15] CPU time: 00:01:17, Memory usage: 1923.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [11] CPU time: 00:01:13, Memory usage: 1925.37 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [9] CPU time: 00:01:11, Memory usage: 1919.91 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
 -- explicit(debug)
 -- [1] CPU time: 00:01:24, Memory usage: 1923.75 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [10] CPU time: 00:01:21, Memory usage: 2019.46 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [15] CPU time: 00:01:21, Memory usage: 2017.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [8] CPU time: 00:01:21, Memory usage: 2017.28 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [13] CPU time: 00:01:20, Memory usage: 2019.51 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [4] CPU time: 00:01:27, Memory usage: 2016.60 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [6] CPU time: 00:01:20, Memory usage: 2017.88 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [12] CPU time: 00:01:22, Memory usage: 2018.44 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [14] CPU time: 00:01:21, Memory usage: 2019.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [11] CPU time: 00:01:17, Memory usage: 2019.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [3] CPU time: 00:01:24, Memory usage: 2019.57 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [5] CPU time: 00:01:26, Memory usage: 2018.53 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [2] CPU time: 00:01:27, Memory usage: 2019.60 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [0] CPU time: 00:01:18, Memory usage: 2026.55 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:193:run
 -- timedependent(info)
 -- Advancing solution from t=0*s to t=0.001*s.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:579:_reformResidual
 -- explicit(info)
 -- Integrating residual term in operator.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [9] CPU time: 00:01:15, Memory usage: 2019.98 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [7] CPU time: 00:01:16, Memory usage: 2018.44 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
 -- explicit(debug)
 -- [1] CPU time: 00:01:27, Memory usage: 2017.73 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [4] CPU time: 00:01:43, Memory usage: 2677.08 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [6] CPU time: 00:01:37, Memory usage: 2678.61 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [1] CPU time: 00:01:43, Memory usage: 2678.00 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [0] CPU time: 00:01:35, Memory usage: 2687.07 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:218:step
 -- explicit(info)
 -- Solving equations.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [5] CPU time: 00:01:43, Memory usage: 2678.91 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [2] CPU time: 00:01:43, Memory usage: 2680.24 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [10] CPU time: 00:01:38, Memory usage: 2679.65 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [11] CPU time: 00:01:33, Memory usage: 2680.03 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [3] CPU time: 00:01:40, Memory usage: 2679.88 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [12] CPU time: 00:01:38, Memory usage: 2679.21 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [9] CPU time: 00:01:31, Memory usage: 2680.93 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [13] CPU time: 00:01:37, Memory usage: 2680.00 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [14] CPU time: 00:01:38, Memory usage: 2680.06 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [7] CPU time: 00:01:32, Memory usage: 2679.39 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [15] CPU time: 00:01:37, Memory usage: 2678.42 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
 -- explicit(debug)
 -- [8] CPU time: 00:01:38, Memory usage: 2677.84 MB
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:200:run
 -- timedependent(info)
 -- Finishing advancing solution from t=0*s to t=0.001*s.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:242:poststep
 -- explicit(info)
 -- Writing solution fields.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/Fault.py:192:writeData
 -- faultcohesivedyn(info)
 -- Writing fault data.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:176:run
 -- timedependent(info)
 -- Main time loop, current time is t=0.001*s
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:187:run
 -- timedependent(info)
 -- Preparing to advance solution from time t=0.001*s to t=0.002*s.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:193:run
 -- timedependent(info)
 -- Advancing solution from t=0.001*s to t=0.002*s.
 >>
/home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:579:_reformResidual
 -- explicit(info)
 -- Integrating residual term in operator.
**********************************
It seems that the program is stucked at the very first step
Can someone help me with this ?
Thanks,
Xiao
-- 
-------------------------------------------------------------------------------------
*Xiao Ma*
Graduate Research Assistant
MS program in Structural Engineering
University of Illinois at Urbana-Champaign
E-mail: *xiaoma5 at illinois.edu <xiaoma5 at illinois.edu>*
--------------------------------------------------------------------------------------
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