[CIG-SHORT] Pylith running on cluster
Charles Williams
willic3 at gmail.com
Mon Dec 15 14:11:25 PST 2014
The ‘fork’ stuff is all warnings. You can make those disappear by setting the OpenMPI parameter they discuss. It’s unclear what the actual problem is.
Cheers,
Charles
> On 15/12/2014, at 2:06 pm, Matthew Knepley <knepley at mcs.anl.gov> wrote:
>
> On Mon, Dec 15, 2014 at 3:31 PM, Xiao Ma <xiaoma5 at illinois.edu <mailto:xiaoma5 at illinois.edu>> wrote:
> Hi,
> I have submitted a job on the cluster , and get the following error "stderr" file,
>
> We should disentagle PyLith problems from cluster problems. Can you run one
> of our examples on the cluster?
>
> Thanks,
>
> Matt
>
> **********************
> ----------------------------------------
>
> Begin Torque Prologue (Mon Dec 15 15:00:25 2014)
>
> Job ID: 1820048.cc-mgmt1.campuscluster.illinois.edu <http://1820048.cc-mgmt1.campuscluster.illinois.edu/>
> Username: xiaoma5
>
> Group: cee_elbanna
>
> Job Name: YOURJOBNAME
>
> Limits: ncpus=1,neednodes=2:ppn=8,nodes=2:ppn=8,walltime=00:40:00
>
> Job Queue: secondary
>
> Account: cee_elbanna
>
> Nodes: taub087 taub091
>
> End Torque Prologue
>
> ----------------------------------------
>
> --------------------------------------------------------------------------
>
> An MPI process has executed an operation involving a call to the
>
> "fork()" system call to create a child process. Open MPI is currently
>
> operating in a condition that could result in memory corruption or
>
> other system errors; your MPI job may hang, crash, or produce silent
>
> data corruption. The use of fork() (or system() or other calls that
>
> create child processes) is strongly discouraged.
>
>
> The process that invoked fork was:
>
>
> Local host: taub091 (PID 3206)
>
> MPI_COMM_WORLD rank: 10
>
>
> If you are *absolutely sure* that your application will successfully
>
> and correctly survive a call to fork(), you may disable this warning
>
> by setting the mpi_warn_on_fork MCA parameter to 0.
>
> --------------------------------------------------------------------------
>
> [taub087:31682] 15 more processes have sent help message help-mpi-runtime.txt / mpi_init:warn-fork
>
> [taub087:31682] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages
>
> WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> Slip weakening'. Using default value of zero.WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
>
> WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> Slip weakening'. Using default value of zero.
>
> WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> Slip weakening'. Using default value of zero.Slip weakening'. Using default value of zero.
>
>
> WARNING: No initial state given for friction model 'WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> Slip weakening'. Using default value of zero.WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
>
> WARNING: No initial state given for friction model 'Slip weakening'. Using default value of zero.
>
> mpirun: abort is already in progress...hit ctrl-c again to forcibly terminate
>
>
> mpirun: killing job...
>
>
> Global symbol "$systemCoreCount" requires explicit package name at /var/spool/torque/mom_priv/epilogue line 450.
>
> Global symbol "$systemCoreCount" requires explicit package name at /var/spool/torque/mom_priv/epilogue line 456.
>
> Execution of /var/spool/torque/mom_priv/epilogue aborted due to compilation errors.
>
> *****************************
>
> The log file :
>
> ******************************
>
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/utils/PetscManager.py:64:initialize
> -- petsc(info)
> -- Initialized PETSc.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [5] CPU time: 00:00:06, Memory usage: 65.77 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [4] CPU time: 00:00:06, Memory usage: 65.77 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [6] CPU time: 00:00:06, Memory usage: 65.77 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [7] CPU time: 00:00:06, Memory usage: 65.77 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [3] CPU time: 00:00:06, Memory usage: 65.82 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [0] CPU time: 00:00:06, Memory usage: 67.78 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [1] CPU time: 00:00:06, Memory usage: 65.83 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [2] CPU time: 00:00:06, Memory usage: 65.77 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [15] CPU time: 00:00:01, Memory usage: 65.73 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [8] CPU time: 00:00:01, Memory usage: 65.74 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [9] CPU time: 00:00:01, Memory usage: 67.73 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [10] CPU time: 00:00:01, Memory usage: 65.74 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [11] CPU time: 00:00:01, Memory usage: 65.74 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [12] CPU time: 00:00:01, Memory usage: 65.73 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [13] CPU time: 00:00:01, Memory usage: 65.74 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
> -- pylithapp(debug)
> -- [14] CPU time: 00:00:01, Memory usage: 65.74 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/meshio/MeshIOObj.py:55:read
> -- meshiocubit(info)
> -- Reading finite-element mesh
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:158:<unknown>
> -- meshiocubit(info)
> -- Reading 4805201 vertices.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:217:<unknown>
> -- meshiocubit(info)
> -- Reading 4800000 cells in 1 blocks.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:281:<unknown>
> -- meshiocubit(info)
> -- Found 5 node sets.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
> -- meshiocubit(info)
> -- Reading node set 'fault' with id 10 containing 4001 nodes.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
> -- meshiocubit(info)
> -- Reading node set 'face_xpos' with id 20 containing 1201 nodes.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
> -- meshiocubit(info)
> -- Reading node set 'face_xneg' with id 21 containing 1201 nodes.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
> -- meshiocubit(info)
> -- Reading node set 'face_yneg' with id 33 containing 4001 nodes.
> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:309:<unknown>
> -- meshiocubit(info)
> -- Reading node set 'face_ypos' with id 43 containing 4001 nodes.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 374.80 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 374.83 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [3] CPU time: 00:00:51, Memory usage: 374.89 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 376.67 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 374.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [3] CPU time: 00:00:51, Memory usage: 374.93 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 376.67 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 374.51 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [2] CPU time: 00:00:54, Memory usage: 375.78 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 371.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 378.39 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [5] CPU time: 00:00:54, Memory usage: 373.82 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [4] CPU time: 00:00:54, Memory usage: 371.49 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 371.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 378.44 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [2] CPU time: 00:00:54, Memory usage: 375.78 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 375.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [11] CPU time: 00:00:44, Memory usage: 378.85 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 378.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 373.93 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [1] CPU time: 00:00:54, Memory usage: 374.65 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [4] CPU time: 00:00:54, Memory usage: 371.51 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 373.93 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 375.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [5] CPU time: 00:00:54, Memory usage: 373.86 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [11] CPU time: 00:00:44, Memory usage: 378.89 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 378.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 374.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [1] CPU time: 00:00:54, Memory usage: 374.65 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 374.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
> -- pylithapp(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 396.18 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:92:preinitialize
> -- timedependent(info)
> -- Pre-initializing problem.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:360:_setupMaterials
> -- explicit(info)
> -- Pre-initializing materials.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
> -- explicit(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 396.24 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
> -- fiatlagrange(info)
> -- Cell geometry:
> -- <pylith.feassemble.CellGeometry.GeometryQuad2D; proxy of <Swig Object of type 'pylith::feassemble::GeometryQuad2D *' at 0x7f712dfd1ab0> >
> -- Vertices:
> -- [[-1. -1.]
> [ 1. -1.]
> [ 1. 1.]
> [-1. 1.]]
> -- Quad pts:
> -- [[-0.57735027 -0.57735027]
> [ 0.57735027 -0.57735027]
> [-0.57735027 0.57735027]
> [ 0.57735027 0.57735027]]
> -- Quad wts:
> -- [ 1. 1. 1. 1.]
> -- Basis fns @ quad pts ):
> -- [[ 0.62200847 0.16666667 0.0446582 0.16666667]
> [ 0.16666667 0.62200847 0.16666667 0.0446582 ]
> [ 0.16666667 0.0446582 0.16666667 0.62200847]
> [ 0.0446582 0.16666667 0.62200847 0.16666667]]
> -- Basis fn derivatives @ quad pts:
> -- [[[-0.39433757 -0.39433757]
> [ 0.39433757 -0.10566243]
> [ 0.10566243 0.10566243]
> [-0.10566243 0.39433757]]
>
> [[-0.39433757 -0.10566243]
> [ 0.39433757 -0.39433757]
> [ 0.10566243 0.39433757]
> [-0.10566243 0.10566243]]
>
> [[-0.10566243 -0.39433757]
> [ 0.10566243 -0.10566243]
> [ 0.39433757 0.10566243]
> [-0.39433757 0.39433757]]
>
> [[-0.10566243 -0.10566243]
> [ 0.10566243 -0.39433757]
> [ 0.39433757 0.39433757]
> [-0.39433757 0.10566243]]]
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 355.10 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 353.37 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 352.26 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 352.16 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 354.18 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [11] CPU time: 00:00:44, Memory usage: 354.10 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 354.18 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 352.27 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [11] CPU time: 00:00:44, Memory usage: 354.10 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 352.16 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 354.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 353.38 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 354.00 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 355.11 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 354.31 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 354.00 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [2] CPU time: 00:00:55, Memory usage: 354.80 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [3] CPU time: 00:00:52, Memory usage: 354.26 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 352.79 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 352.79 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [1] CPU time: 00:00:55, Memory usage: 352.80 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [5] CPU time: 00:00:55, Memory usage: 353.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 370.36 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials
> -- explicit(info)
> -- Added elasticity integrator for material 'Elastic material'.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:389:_setupBC
> -- explicit(info)
> -- Pre-initializing boundary conditions.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 352.80 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [3] CPU time: 00:00:52, Memory usage: 354.26 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
> -- explicit(debug)
> -- [4] CPU time: 00:00:54, Memory usage: 351.05 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [1] CPU time: 00:00:55, Memory usage: 352.80 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 352.80 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [2] CPU time: 00:00:55, Memory usage: 354.81 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 370.37 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [5] CPU time: 00:00:55, Memory usage: 353.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
> -- fiatlagrange(info)
> -- Cell geometry:
> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca33900> >
> -- Vertices:
> -- [[-1.]
> [ 1.]]
> -- Quad pts:
> -- [[-0.57735027]
> [ 0.57735027]]
> -- Quad wts:
> -- [ 1. 1.]
> -- Basis fns @ quad pts ):
> -- [[ 0.78867513 0.21132487]
> [ 0.21132487 0.78867513]]
> -- Basis fn derivatives @ quad pts:
> -- [[[-0.5]
> [ 0.5]]
>
> [[-0.5]
> [ 0.5]]]
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
> -- explicit(debug)
> -- [4] CPU time: 00:00:54, Memory usage: 351.06 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
> -- explicit(info)
> -- Added boundary condition 'face_xpos' as an integrator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
> -- fiatlagrange(info)
> -- Cell geometry:
> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e0c0> >
> -- Vertices:
> -- [[-1.]
> [ 1.]]
> -- Quad pts:
> -- [[-0.57735027]
> [ 0.57735027]]
> -- Quad wts:
> -- [ 1. 1.]
> -- Basis fns @ quad pts ):
> -- [[ 0.78867513 0.21132487]
> [ 0.21132487 0.78867513]]
> -- Basis fn derivatives @ quad pts:
> -- [[[-0.5]
> [ 0.5]]
>
> [[-0.5]
> [ 0.5]]]
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
> -- explicit(info)
> -- Added boundary condition 'face_xneg' as an integrator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
> -- fiatlagrange(info)
> -- Cell geometry:
> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e120> >
> -- Vertices:
> -- [[-1.]
> [ 1.]]
> -- Quad pts:
> -- [[-0.57735027]
> [ 0.57735027]]
> -- Quad wts:
> -- [ 1. 1.]
> -- Basis fns @ quad pts ):
> -- [[ 0.78867513 0.21132487]
> [ 0.21132487 0.78867513]]
> -- Basis fn derivatives @ quad pts:
> -- [[[-0.5]
> [ 0.5]]
>
> [[-0.5]
> [ 0.5]]]
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
> -- explicit(info)
> -- Added boundary condition 'face_yneg' as an integrator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
> -- fiatlagrange(info)
> -- Cell geometry:
> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e060> >
> -- Vertices:
> -- [[-1.]
> [ 1.]]
> -- Quad pts:
> -- [[-0.57735027]
> [ 0.57735027]]
> -- Quad wts:
> -- [ 1. 1.]
> -- Basis fns @ quad pts ):
> -- [[ 0.78867513 0.21132487]
> [ 0.21132487 0.78867513]]
> -- Basis fn derivatives @ quad pts:
> -- [[[-0.5]
> [ 0.5]]
>
> [[-0.5]
> [ 0.5]]]
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
> -- explicit(info)
> -- Added boundary condition 'face_ypos' as an integrator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [5] CPU time: 00:00:55, Memory usage: 353.70 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [2] CPU time: 00:00:55, Memory usage: 355.11 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 355.43 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 352.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 354.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 354.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [11] CPU time: 00:00:45, Memory usage: 354.39 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 352.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [1] CPU time: 00:00:55, Memory usage: 353.06 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [3] CPU time: 00:00:52, Memory usage: 354.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 353.85 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 354.57 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 353.23 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [4] CPU time: 00:00:55, Memory usage: 351.50 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 370.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:425:_setupInterfaces
> -- explicit(info)
> -- Pre-initializing interior interfaces.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [5] CPU time: 00:00:55, Memory usage: 353.75 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [2] CPU time: 00:00:55, Memory usage: 355.17 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [3] CPU time: 00:00:52, Memory usage: 354.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py:115:preinitialize
> -- faultcohesivedyn(info)
> -- Pre-initializing fault 'fault'.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [2] CPU time: 00:00:55, Memory usage: 355.18 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [4] CPU time: 00:00:55, Memory usage: 351.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [5] CPU time: 00:00:55, Memory usage: 353.75 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
> -- fiatlagrange(info)
> -- Cell geometry:
> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e930> >
> -- Vertices:
> -- [[-1.]
> [ 1.]]
> -- Quad pts:
> -- [[-1.]
> [ 1.]]
> -- Quad wts:
> -- [ 1. 1.]
> -- Basis fns @ quad pts ):
> -- [[ 1.00000000e+00 -3.49113100e-17]
> [ -3.49113100e-17 1.00000000e+00]]
> -- Basis fn derivatives @ quad pts:
> -- [[[-0.5]
> [ 0.5]]
>
> [[-0.5]
> [ 0.5]]]
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:434:_setupInterfaces
> -- explicit(info)
> -- Added interface condition 'fault' as an integrator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 354.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 352.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 354.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 353.92 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 355.50 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 352.67 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 353.29 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
> -- explicit(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 353.10 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [3] CPU time: 00:00:52, Memory usage: 354.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [1] CPU time: 00:00:55, Memory usage: 353.12 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [11] CPU time: 00:00:45, Memory usage: 354.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 354.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 370.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:162:preinitialize
> -- explicit(info)
> -- Pre-initializing output.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [8] CPU time: 00:00:49, Memory usage: 352.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [14] CPU time: 00:00:49, Memory usage: 354.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [12] CPU time: 00:00:49, Memory usage: 353.92 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [9] CPU time: 00:00:44, Memory usage: 355.50 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [13] CPU time: 00:00:49, Memory usage: 354.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [7] CPU time: 00:00:51, Memory usage: 353.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [1] CPU time: 00:00:55, Memory usage: 353.12 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [11] CPU time: 00:00:45, Memory usage: 354.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [15] CPU time: 00:00:49, Memory usage: 352.67 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [10] CPU time: 00:00:49, Memory usage: 354.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [4] CPU time: 00:00:55, Memory usage: 351.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [0] CPU time: 00:00:54, Memory usage: 370.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Problem.py:150:verifyConfiguration
> -- timedependent(info)
> -- Verifying compatibility of problem configuration.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
> -- explicit(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 353.16 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
> -- pylithapp(debug)
> -- [6] CPU time: 00:00:48, Memory usage: 353.16 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:117:initialize
> -- timedependent(info)
> -- Initializing problem.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [6] CPU time: 00:00:49, Memory usage: 353.23 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [0] CPU time: 00:00:55, Memory usage: 370.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:466:_initialize
> -- explicit(info)
> -- Initializing integrators.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [10] CPU time: 00:00:50, Memory usage: 354.71 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [15] CPU time: 00:00:50, Memory usage: 352.73 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [14] CPU time: 00:00:50, Memory usage: 354.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [1] CPU time: 00:00:56, Memory usage: 353.19 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [4] CPU time: 00:00:55, Memory usage: 351.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [11] CPU time: 00:00:45, Memory usage: 354.52 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [8] CPU time: 00:00:50, Memory usage: 352.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [13] CPU time: 00:00:50, Memory usage: 354.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [2] CPU time: 00:00:56, Memory usage: 355.25 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [5] CPU time: 00:00:56, Memory usage: 353.83 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [7] CPU time: 00:00:52, Memory usage: 353.37 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [9] CPU time: 00:00:45, Memory usage: 355.57 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [3] CPU time: 00:00:53, Memory usage: 354.68 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
> -- explicit(debug)
> -- [12] CPU time: 00:00:50, Memory usage: 353.99 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py:164:initialize
> -- faultcohesivedyn(info)
> -- Initializing fault 'fault'.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:03, Memory usage: 766.14 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [7] CPU time: 00:00:59, Memory usage: 760.97 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [15] CPU time: 00:00:57, Memory usage: 760.02 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [12] CPU time: 00:00:58, Memory usage: 761.34 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:03, Memory usage: 767.47 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [6] CPU time: 00:00:56, Memory usage: 766.79 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:00, Memory usage: 769.09 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [14] CPU time: 00:00:58, Memory usage: 769.04 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [9] CPU time: 00:00:51, Memory usage: 762.76 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:03, Memory usage: 768.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [10] CPU time: 00:00:57, Memory usage: 769.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:03, Memory usage: 768.13 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [8] CPU time: 00:00:57, Memory usage: 760.38 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [13] CPU time: 00:00:56, Memory usage: 769.06 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [11] CPU time: 00:00:53, Memory usage: 768.88 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:02, Memory usage: 777.84 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:475:_initialize
> -- explicit(info)
> -- Initializing constraints.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [6] CPU time: 00:00:56, Memory usage: 766.79 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:03, Memory usage: 766.14 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:00, Memory usage: 769.09 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [15] CPU time: 00:00:57, Memory usage: 760.02 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [12] CPU time: 00:00:58, Memory usage: 761.34 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:03, Memory usage: 768.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [14] CPU time: 00:00:58, Memory usage: 769.04 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [10] CPU time: 00:00:57, Memory usage: 769.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:03, Memory usage: 767.47 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [11] CPU time: 00:00:53, Memory usage: 768.88 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:02, Memory usage: 777.84 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:481:_initialize
> -- explicit(info)
> -- Setting up solution output.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [7] CPU time: 00:00:59, Memory usage: 760.97 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:03, Memory usage: 768.13 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [8] CPU time: 00:00:57, Memory usage: 760.38 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [9] CPU time: 00:00:51, Memory usage: 762.76 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
> -- explicit(debug)
> -- [13] CPU time: 00:00:56, Memory usage: 769.06 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:18, Memory usage: 766.72 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [6] CPU time: 00:01:12, Memory usage: 767.43 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:15, Memory usage: 769.67 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:18, Memory usage: 768.71 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [7] CPU time: 00:01:07, Memory usage: 761.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:10, Memory usage: 778.49 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:490:_initialize
> -- explicit(info)
> -- Creating solution field.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:18, Memory usage: 769.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [10] CPU time: 00:01:13, Memory usage: 769.86 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [11] CPU time: 00:01:08, Memory usage: 769.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [8] CPU time: 00:01:13, Memory usage: 761.04 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [9] CPU time: 00:01:06, Memory usage: 763.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [12] CPU time: 00:01:13, Memory usage: 762.00 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [13] CPU time: 00:01:12, Memory usage: 769.65 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [14] CPU time: 00:01:13, Memory usage: 769.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:18, Memory usage: 768.06 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
> -- explicit(debug)
> -- [15] CPU time: 00:01:12, Memory usage: 766.79 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:19, Memory usage: 971.25 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:19, Memory usage: 970.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [7] CPU time: 00:01:08, Memory usage: 963.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:16, Memory usage: 971.48 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [6] CPU time: 00:01:12, Memory usage: 969.39 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:19, Memory usage: 968.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:19, Memory usage: 969.87 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:10, Memory usage: 980.44 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:119:initialize
> -- explicit(info)
> -- Creating other fields.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [14] CPU time: 00:01:14, Memory usage: 971.47 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [10] CPU time: 00:01:13, Memory usage: 971.68 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [8] CPU time: 00:01:14, Memory usage: 962.99 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [9] CPU time: 00:01:07, Memory usage: 965.41 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [13] CPU time: 00:01:12, Memory usage: 971.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [15] CPU time: 00:01:13, Memory usage: 968.79 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [12] CPU time: 00:01:14, Memory usage: 963.97 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
> -- explicit(debug)
> -- [11] CPU time: 00:01:09, Memory usage: 971.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:14, Memory usage: 1769.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:22, Memory usage: 1757.33 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [13] CPU time: 00:01:16, Memory usage: 1760.21 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [15] CPU time: 00:01:16, Memory usage: 1758.09 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [7] CPU time: 00:01:11, Memory usage: 1752.93 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [6] CPU time: 00:01:16, Memory usage: 1758.56 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:19, Memory usage: 1760.36 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [10] CPU time: 00:01:17, Memory usage: 1760.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:22, Memory usage: 1758.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:22, Memory usage: 1759.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [11] CPU time: 00:01:12, Memory usage: 1760.14 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [12] CPU time: 00:01:17, Memory usage: 1753.07 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [8] CPU time: 00:01:17, Memory usage: 1752.03 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [9] CPU time: 00:01:10, Memory usage: 1754.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:22, Memory usage: 1760.35 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
> -- explicit(debug)
> -- [14] CPU time: 00:01:17, Memory usage: 1760.25 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:14, Memory usage: 1769.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:151:initialize
> -- explicit(info)
> -- Creating lumped Jacobian matrix.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:22, Memory usage: 1757.33 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [15] CPU time: 00:01:16, Memory usage: 1758.09 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [13] CPU time: 00:01:16, Memory usage: 1760.21 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [7] CPU time: 00:01:11, Memory usage: 1752.93 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [6] CPU time: 00:01:16, Memory usage: 1758.56 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:22, Memory usage: 1760.35 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:22, Memory usage: 1759.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [9] CPU time: 00:01:10, Memory usage: 1754.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [11] CPU time: 00:01:12, Memory usage: 1760.14 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [14] CPU time: 00:01:17, Memory usage: 1760.25 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [10] CPU time: 00:01:17, Memory usage: 1760.31 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [12] CPU time: 00:01:17, Memory usage: 1753.07 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [8] CPU time: 00:01:17, Memory usage: 1752.03 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:23, Memory usage: 1758.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:20, Memory usage: 1760.36 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [6] CPU time: 00:01:16, Memory usage: 1923.75 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:14, Memory usage: 1934.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:175:initialize
> -- explicit(info)
> -- Initializing solver.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [13] CPU time: 00:01:16, Memory usage: 1925.32 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [12] CPU time: 00:01:18, Memory usage: 1918.27 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [6] CPU time: 00:01:16, Memory usage: 1923.76 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [0] CPU time: 00:01:14, Memory usage: 1934.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [8] CPU time: 00:01:17, Memory usage: 1917.20 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [10] CPU time: 00:01:18, Memory usage: 1925.39 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [13] CPU time: 00:01:16, Memory usage: 1925.34 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [15] CPU time: 00:01:17, Memory usage: 1923.32 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [9] CPU time: 00:01:11, Memory usage: 1919.81 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [11] CPU time: 00:01:13, Memory usage: 1925.27 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [0] CPU time: 00:01:14, Memory usage: 1934.63 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:131:run
> -- timedependent(info)
> -- Solving problem.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:176:run
> -- timedependent(info)
> -- Main time loop, current time is t=0*s
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [6] CPU time: 00:01:16, Memory usage: 1923.76 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:23, Memory usage: 1922.44 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:23, Memory usage: 1925.53 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:23, Memory usage: 1924.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [14] CPU time: 00:01:18, Memory usage: 1925.37 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [12] CPU time: 00:01:18, Memory usage: 1918.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:20, Memory usage: 1925.45 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [11] CPU time: 00:01:13, Memory usage: 1925.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [8] CPU time: 00:01:17, Memory usage: 1917.21 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:23, Memory usage: 1923.65 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [13] CPU time: 00:01:16, Memory usage: 1925.34 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [14] CPU time: 00:01:18, Memory usage: 1925.38 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [15] CPU time: 00:01:17, Memory usage: 1923.34 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [9] CPU time: 00:01:11, Memory usage: 1919.82 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [2] CPU time: 00:01:23, Memory usage: 1925.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [5] CPU time: 00:01:23, Memory usage: 1924.43 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
> -- explicit(debug)
> -- [7] CPU time: 00:01:12, Memory usage: 1918.14 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [3] CPU time: 00:01:20, Memory usage: 1925.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [10] CPU time: 00:01:18, Memory usage: 1925.41 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [11] CPU time: 00:01:13, Memory usage: 1925.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [12] CPU time: 00:01:18, Memory usage: 1918.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [8] CPU time: 00:01:17, Memory usage: 1917.21 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [5] CPU time: 00:01:23, Memory usage: 1924.43 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [2] CPU time: 00:01:23, Memory usage: 1925.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [4] CPU time: 00:01:23, Memory usage: 1922.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [7] CPU time: 00:01:12, Memory usage: 1918.16 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [9] CPU time: 00:01:11, Memory usage: 1919.82 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
> -- explicit(debug)
> -- [1] CPU time: 00:01:23, Memory usage: 1923.66 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [15] CPU time: 00:01:17, Memory usage: 1923.34 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [10] CPU time: 00:01:18, Memory usage: 1925.41 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [14] CPU time: 00:01:18, Memory usage: 1925.38 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [7] CPU time: 00:01:12, Memory usage: 1918.16 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [3] CPU time: 00:01:20, Memory usage: 1925.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [1] CPU time: 00:01:23, Memory usage: 1923.66 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
> -- pylithapp(debug)
> -- [4] CPU time: 00:01:23, Memory usage: 1922.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:187:run
> -- timedependent(info)
> -- Preparing to advance solution from time t=0*s to t=0.001*s.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [0] CPU time: 00:01:15, Memory usage: 1934.71 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:327:_reformJacobian
> -- explicit(info)
> -- Integrating Jacobian operator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [4] CPU time: 00:01:23, Memory usage: 1922.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [6] CPU time: 00:01:17, Memory usage: 1923.84 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [7] CPU time: 00:01:12, Memory usage: 1918.24 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [5] CPU time: 00:01:23, Memory usage: 1924.52 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [3] CPU time: 00:01:21, Memory usage: 1925.54 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [2] CPU time: 00:01:23, Memory usage: 1925.62 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [14] CPU time: 00:01:18, Memory usage: 1925.47 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [8] CPU time: 00:01:18, Memory usage: 1917.30 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [12] CPU time: 00:01:18, Memory usage: 1918.37 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [13] CPU time: 00:01:17, Memory usage: 1925.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [10] CPU time: 00:01:18, Memory usage: 1925.50 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [15] CPU time: 00:01:17, Memory usage: 1923.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [11] CPU time: 00:01:13, Memory usage: 1925.37 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [9] CPU time: 00:01:11, Memory usage: 1919.91 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
> -- explicit(debug)
> -- [1] CPU time: 00:01:24, Memory usage: 1923.75 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [10] CPU time: 00:01:21, Memory usage: 2019.46 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [15] CPU time: 00:01:21, Memory usage: 2017.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [8] CPU time: 00:01:21, Memory usage: 2017.28 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [13] CPU time: 00:01:20, Memory usage: 2019.51 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [4] CPU time: 00:01:27, Memory usage: 2016.60 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [6] CPU time: 00:01:20, Memory usage: 2017.88 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [12] CPU time: 00:01:22, Memory usage: 2018.44 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [14] CPU time: 00:01:21, Memory usage: 2019.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [11] CPU time: 00:01:17, Memory usage: 2019.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [3] CPU time: 00:01:24, Memory usage: 2019.57 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [5] CPU time: 00:01:26, Memory usage: 2018.53 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [2] CPU time: 00:01:27, Memory usage: 2019.60 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [0] CPU time: 00:01:18, Memory usage: 2026.55 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:193:run
> -- timedependent(info)
> -- Advancing solution from t=0*s to t=0.001*s.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:579:_reformResidual
> -- explicit(info)
> -- Integrating residual term in operator.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [9] CPU time: 00:01:15, Memory usage: 2019.98 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [7] CPU time: 00:01:16, Memory usage: 2018.44 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
> -- explicit(debug)
> -- [1] CPU time: 00:01:27, Memory usage: 2017.73 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [4] CPU time: 00:01:43, Memory usage: 2677.08 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [6] CPU time: 00:01:37, Memory usage: 2678.61 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [1] CPU time: 00:01:43, Memory usage: 2678.00 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [0] CPU time: 00:01:35, Memory usage: 2687.07 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:218:step
> -- explicit(info)
> -- Solving equations.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [5] CPU time: 00:01:43, Memory usage: 2678.91 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [2] CPU time: 00:01:43, Memory usage: 2680.24 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [10] CPU time: 00:01:38, Memory usage: 2679.65 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [11] CPU time: 00:01:33, Memory usage: 2680.03 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [3] CPU time: 00:01:40, Memory usage: 2679.88 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [12] CPU time: 00:01:38, Memory usage: 2679.21 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [9] CPU time: 00:01:31, Memory usage: 2680.93 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [13] CPU time: 00:01:37, Memory usage: 2680.00 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [14] CPU time: 00:01:38, Memory usage: 2680.06 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [7] CPU time: 00:01:32, Memory usage: 2679.39 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [15] CPU time: 00:01:37, Memory usage: 2678.42 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
> -- explicit(debug)
> -- [8] CPU time: 00:01:38, Memory usage: 2677.84 MB
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:200:run
> -- timedependent(info)
> -- Finishing advancing solution from t=0*s to t=0.001*s.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:242:poststep
> -- explicit(info)
> -- Writing solution fields.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/Fault.py:192:writeData
> -- faultcohesivedyn(info)
> -- Writing fault data.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:176:run
> -- timedependent(info)
> -- Main time loop, current time is t=0.001*s
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:187:run
> -- timedependent(info)
> -- Preparing to advance solution from time t=0.001*s to t=0.002*s.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:193:run
> -- timedependent(info)
> -- Advancing solution from t=0.001*s to t=0.002*s.
> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:579:_reformResidual
> -- explicit(info)
> -- Integrating residual term in operator.
> **********************************
> It seems that the program is stucked at the very first step
> Can someone help me with this ?
> Thanks,
> Xiao
> --
> -------------------------------------------------------------------------------------
> Xiao Ma
> Graduate Research Assistant
> MS program in Structural Engineering
> University of Illinois at Urbana-Champaign
> E-mail: xiaoma5 at illinois.edu <mailto:xiaoma5 at illinois.edu>
> --------------------------------------------------------------------------------------
>
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