[CIG-SHORT] Pylith running on cluster
Matthew Knepley
knepley at mcs.anl.gov
Mon Dec 15 14:16:16 PST 2014
On Mon, Dec 15, 2014 at 4:11 PM, Charles Williams <willic3 at gmail.com> wrote:
>
> The ‘fork’ stuff is all warnings. You can make those disappear by setting
> the OpenMPI parameter they discuss. It’s unclear what the actual problem
> is.
>
I will note that the residual evaluation is very compute intensive. Is it
possible that it is not hung, but just calculating.
Do you have an estimate of the running time for your problem? This is why I
wanted to try and example.
Matt
> Cheers,
> Charles
>
>
> On 15/12/2014, at 2:06 pm, Matthew Knepley <knepley at mcs.anl.gov> wrote:
>
> On Mon, Dec 15, 2014 at 3:31 PM, Xiao Ma <xiaoma5 at illinois.edu> wrote:
>>
>> Hi,
>> I have submitted a job on the cluster , and get the following error
>> "stderr" file,
>>
>
> We should disentagle PyLith problems from cluster problems. Can you run one
> of our examples on the cluster?
>
> Thanks,
>
> Matt
>
>
>> **********************
>>
>> ----------------------------------------
>>
>> Begin Torque Prologue (Mon Dec 15 15:00:25 2014)
>>
>> Job ID: 1820048.cc-mgmt1.campuscluster.illinois.edu
>>
>> Username: xiaoma5
>>
>> Group: cee_elbanna
>>
>> Job Name: YOURJOBNAME
>>
>> Limits:
>> ncpus=1,neednodes=2:ppn=8,nodes=2:ppn=8,walltime=00:40:00
>>
>> Job Queue: secondary
>>
>> Account:   ; cee_elbanna
>>
>> Nodes: taub087 taub091
>>
>> End Torque Prologue
>>
>> ----------------------------------------
>>
>> --------------------------------------------------------------------------
>>
>> An MPI process has executed an operation involving a call to the
>>
>> "fork()" system call to create a child process. Open MPI is currently
>>
>> operating in a condition that could result in memory corruption or
>>
>> other system errors; your MPI job may hang, crash, or produce silent
>>
>> data corruption. The use of fork() (or system() or other calls that
>>
>> create child processes) is strongly discouraged.
>>
>>
>> The process that invoked fork was:
>>
>>
>> Local host: taub091 (PID 3206)
>>
>> MPI_COMM_WORLD rank: 10
>>
>>
>> If you are *absolutely sure* that your application will successfully
>>
>> and correctly survive a call to fork(), you may disable this warning
>>
>> by setting the mpi_warn_on_fork MCA parameter to 0.
>>
>> --------------------------------------------------------------------------
>>
>> [taub087:31682] 15 more processes have sent help message
>> help-mpi-runtime.txt / mpi_init:warn-fork
>>
>> [taub087:31682] Set MCA parameter "orte_base_help_aggregate" to 0 to see
>> all help / error messages
>>
>> WARNING: No initial state given for friction model 'WARNING: No initial
>> state given for friction model 'Slip weakening'. Using default value of
>> zero.
>>
>> WARNING: No initial state given for friction model 'Slip weakening'.
>> Using default value of zero.
>>
>> Slip weakening'. Using default value of zero.WARNING: No initial state
>> given for friction model 'Slip weakening'. Using default value of zero.
>>
>>
>> WARNING: No initial state given for friction model 'Slip weakening'.
>> Using default value of zero.
>>
>> WARNING: No initial state given for friction model 'WARNING: No initial
>> state given for friction model 'Slip weakening'. Using default value of
>> zero.
>>
>> WARNING: No initial state given for friction model 'Slip weakening'.
>> Using default value of zero.
>>
>> Slip weakening'. Using default value of zero.
>>
>> WARNING: No initial state given for friction model 'Slip weakening'.
>> Using default value of zero.
>>
>> WARNING: No initial state given for friction model 'WARNING: No initial
>> state given for friction model 'WARNING: No initial state given for
>> friction model 'Slip weakening'. Using default value of zero.
>>
>> Slip weakening'. Using default value of zero.Slip weakening'. Using
>> default value of zero.
>>
>>
>> WARNING: No initial state given for friction model 'WARNING: No initial
>> state given for friction model 'Slip weakening'. Using default value of
>> zero.
>>
>> Slip weakening'. Using default value of zero.WARNING: No initial state
>> given for friction model 'Slip weakening'. Using default value of zero.
>>
>>
>> WARNING: No initial state given for friction model 'Slip weakening'.
>> Using default value of zero.
>>
>> mpirun: abort is already in progress...hit ctrl-c again to forcibly
>> terminate
>>
>>
>> mpirun: killing job...
>>
>>
>> Global symbol "$systemCoreCount" requires explicit package name at
>> /var/spool/torque/mom_priv/epilogue line 450.
>>
>> Global symbol "$systemCoreCount" requires explicit package name at
>> /var/spool/torque/mom_priv/epilogue line 456.
>>
>> Execution of /var/spool/torque/mom_priv/epilogue aborted due to
>> compilation errors.
>>
>> *****************************
>>
>> The log file :
>>
>> ******************************
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/utils/PetscManager.py:64:initialize
>> -- petsc(info)
>> -- Initialized PETSc.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [5] CPU time: 00:00:06, Memory usage: 65.77 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp( debug)
>> -- [4] CPU time: 00:00:06, Memory usage: 65.77 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [6] CPU time: 00:00:06, Memory usage: 65.77 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [7] CPU time: 00:00:06, Memory usage: 65.77 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [3] CPU time: 00:00:06, Memory usage: 65.82 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pyl ithapp(debug)
>> -- [0] CPU time: 00:00:06, Memory usage: 67.78 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [1] CPU time: 00:00:06, Memory usage: 65.83 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [2] CPU time: 00:00:06, Memory usage: 65.77 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [15] CPU time: 00:00:01, Memory usage: 65.73 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> &nbs p;-- pylithapp(debug)
>> -- [8] CPU time: 00:00:01, Memory usage: 65.74 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [9] CPU time: 00:00:01, Memory usage: 67.73 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [10] CPU time: 00:00:01, Memory usage: 65.74 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [11] CPU time: 00:00:01, Memory usage: 65.74 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [12] CPU time: 00:00:01, Memory usage: 65.73 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [13] CPU time: 00:00:01, Memory usage: 65.74 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:103:main
>> -- pylithapp(debug)
>> -- [14] CPU time: 00:00:01, Memory usage: 65.74 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/meshio/MeshIOObj.py:55:read
>> -- meshiocubit(info)
>> -- Reading finite-element mesh
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc:158:<unkno
>> wn>
>> -- meshiocubit(info)
>> -- Reading 4805201 vertices.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc
>> :217:<unknown>
>> -- meshiocubit(info)
>> -- Reading 4800000 cells in 1 blocks.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc
>> :281:<unknown>
>> -- meshiocubit(info)
>> -- Found 5 node sets.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc
>> :309:<unknown>
>> -- meshiocubit(info)
>> -- Reading node set 'fault' with id 10 containing 4001 nodes.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio /MeshIOCubit.cc
>> :309:<unknown>
>> -- meshiocubit(info)
>> -- Reading node set 'face_xpos' with id 20 containing 1201 nodes.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc
>> :309:<unknown>
>> -- meshiocubit(info)
>> -- Reading node set 'face_xneg' with id 21 containing 1201 nodes.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc
>> :309:<unknown>
>> -- meshiocubit(info)
>> -- Reading node set 'face_yneg' with id 33 containing 4001 nodes.
>> >> ../../../pylith-2.0.3/libsrc/pylith/meshio/MeshIOCubit.cc
>> :309:<unknown>
>> - - meshiocubit(info)
>> -- Reading node set 'face_ypos' with id 43 containing 4001 nodes.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 374.80 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 374.83 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [3] CPU time: 00:00:51, Memory usage: 374.89 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyL
>> ithApp.py:115:main
>> -- pylithapp(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 376.67 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 374.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [3] CPU time: 00:00:51, Memory usage: 374.93 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 376.67 MB
>> >> /home/xiaoma5/project-cse/pylith/
>> lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 374.51 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [2] CPU time: 00:00:54, Memory usage: 375.78 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 371.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 378.39 MB
>> >> /home
>> /xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [5] CPU time: 00:00:54, Memory usage: 373.82 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [4] CPU time: 00:00:54, Memory usage: 371.49 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 371.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 378.4 4 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [2] CPU time: 00:00:54, Memory usage: 375.78 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 375.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [11] CPU time: 00:00:44, Memory usage: 378.85 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 378.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [12] CPU time: 00:00:49, Memory usage: 373.93 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [1] CPU time: 00:00:54, Memory usage: 374.65 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [4] CPU time: 00:00:54, Memory usage: 371.51 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debu g)
>> -- [12] CPU time: 00:00:49, Memory usage: 373.93 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 375.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [5] CPU time: 00:00:54, Memory usage: 373.86 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:44, Memory usage: 378.89 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problem
>> s/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 378.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 374.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [1] CPU time: 00:00:54, Memory usage: 374.65 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 374.55 MB
>> >> /home/xiaoma5/p
>> roject-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:115:main
>> -- pylithapp(debug)
>> -- [0] CPU time: 00:00:54, Memory usage: 396.18 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:92:preinitialize
>> -- timedependent(info)
>> -- Pre-initializing problem.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:360:_setupMaterials
>> -- explicit(info)
>> -- Pre-initializing materials.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:361:_setupMaterials
>> -- explicit(debug)
>> -- [0] CPU time: 00:00:54, Memory usage: 396.24 MB
>> >& gt;
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
>> -- fiatlagrange(info)
>> -- Cell geometry:
>> -- <pylith.feassemble.CellGeometry.GeometryQuad2D; proxy of <Swig Object
>> of type 'pylith::feassemble::GeometryQuad2D *' at 0x7f712dfd1ab0> >
>> -- Vertices:
>> -- [[-1. -1.]
>> [ 1. -1.]
>> [ 1. 1.]
>> [-1. 1.]]
>> -- Quad pts:
>> -- [[-0.57735027 -0.57735027]
>> [ 0.57735027 -0.57735027]
>> [-0.57735027 0.57735027]
>> [ 0.57735027 0.57735027]]
>> -- Quad wts:
>> -- [ 1. 1. 1. 1.]
>> -- Basis fns @ quad p ts ):
>> -- [[ 0.62200847 0.16666667 0.0446582 0.16666667]
>> [ 0.16666667 0.62200847 0.16666667 0.0446582 ]
>> [ 0.16666667 0.0446582 0.16666667 0.62200847]
>> [ 0.0446582 0.16666667 0.62200847 0.16666667]]
>> -- Basis fn derivatives @ quad pts:
>> -- [[[-0.39433757 -0.39433757]
>> [ 0.39433757 -0.10566243]
>> [ 0.10566243 0.10566243]
>> [-0.10566243 0.39433757]]
>>
>> [[-0.39433757 -0.10566243]
>> [ 0.39433757 -0.39433757]
>> [ 0.10566243 0.39433757]
>> [-0.10566243 0.10566243]]
>>
>> [[-0.10566243 -0.3943375 7]
>> [ 0.10566243 -0.10566243]
>> [ 0.39433757 0.10566243]
>> [-0.39433757 0.39433757]]
>>
>> [[-0.10566243 -0.10566243]
>> [ 0.10566243 -0.39433757]
>> [ 0.39433757 0.39433757]
>> [-0.39433757 0.10566243]]]
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 355.10 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:49, Memory usage: 353.37 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 352.26 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 352.16 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 354.18 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:44, Memory usage: 354.10 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 354.18 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 352.27 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:44, Memory usage: 354.10 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 352.16 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 354.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:49, Memory usage: 353.38 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 354.00 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylit
>> h/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 355.11 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 354.31 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 354.00 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [2] CPU time: 00:00:55, Memory usage: 354.80 MB
>> >> /home/xiao
>> ma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [3] CPU time: 00:00:52, Memory usage: 354.26 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 352.79 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 352.79 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [1] CPU time: 00: 00:55, Memory usage: 352.80 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [5] CPU time: 00:00:55, Memory usage: 353.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [0] CPU time: 00:00:54, Memory usage: 370.36 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:373:_setupMaterials
>> -- explicit(info)
>> -- Added elasticity integrator for material 'Elastic material'.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:389:_setupBC
>> -- explicit(info)
>> -- Pre-initializing boundary conditions.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 352.80 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [3] CPU time: 00:00:52, Memory usage: 354.26 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:370:_setupMaterials
>> -- explicit(debug)
>> -- [4] CPU time: 00:00:54, Memory usage: 351.05 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/pro
>> blems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [1] CPU time: 00:00:55, Memory usage: 352.80 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 352.80 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [2] CPU time: 00:00:55, Memory usage: 354.81 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [0] CPU time: 00:00:54, Memory usage: 370.37 MB
>> >> /home/xiaoma5/project-cs
>> e/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [5] CPU time: 00:00:55, Memory usage: 353.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
>> -- fiatlagrange(info)
>> -- Cell geometry:
>> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
>> of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca33900> >
>> -- Vertices:
>> -- [[-1.]
>> [ 1.]]
>> -- Quad pts:
>> -- [[-0.57735027]
>> [ 0.57735027]]
>> -- Quad wts:
>> -- [ 1. 1.]
>> -- Basis fns @ quad pts ):
>> -- [[ 0.78867513 0.21132487]
>> [ 0.21132487 0.78867513]]
>> -- Basis fn derivatives @ quad pts:
>> -- [[[-0.5]
>> [ 0.5]]
>>
>> [[-0.5]
>> [ 0.5]]]
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:390:_setupBC
>> -- explicit(debug)
>> -- [4] CPU time: 00:00:54, Memory usage: 351.06 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
>> -- explicit(info)
>> -- Added boundary condition 'face_xpos' as an integrator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLag
>> range.py:407:initialize
>> -- fiatlagrange(info)
>> -- Cell geometry:
>> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
>> of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e0c0> >
>> -- Vertices:
>> -- [[-1.]
>> [ 1.]]
>> -- Quad pts:
>> -- [[-0.57735027]
>> [ 0.57735027]]
>> -- Quad wts:
>> -- [ 1. 1.]
>> -- Basis fns @ quad pts ):
>> -- [[ 0.78867513 0.21132487]
>> [ 0.21132487 0.78867513]]
>> -- Basis fn derivatives @ quad pts:
>> -- [[[-0.5]
>> [ 0.5]]
>>
>> [[-0.5]
>> [ 0.5]]]
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
>> -- explicit(info)
>> -- Added boundary condition 'face_xneg' as an integrator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
>> -- fiatlagrange(info)
>> -- Cell geometry:
>> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
>> of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e120> >
>> -- Vertices:
>> -- [[-1.]
>> [ 1.]]
>> -- Quad pts:
>> -- [[-0.57735027]
>> [ 0.57735027]]
>> -- Quad wts:
>> -- [ 1. 1.]
>> -- Basis fns @ quad pts ):
>> -- [[ 0.78867513 0.21132487]
>> [ 0.21132487 0.78867513]]
>> -- Basis fn derivatives @ quad pts:
>> -- [[[-0.5]
>> [ 0.5]]
>>
>> [[-0.5]
>> [ 0.5]]]
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
>> -- explicit(info)
>> -- Added boundary condition 'face_yneg' as an integrator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
>> -- fiatlagrange(info)
>> -- Cell geometry:
>> -- <pylith.feassemble.C ellGeometry.GeometryLine2D; proxy of <Swig
>> Object of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e060> >
>> -- Vertices:
>> -- [[-1.]
>> [ 1.]]
>> -- Quad pts:
>> -- [[-0.57735027]
>> [ 0.57735027]]
>> -- Quad wts:
>> -- [ 1. 1.]
>> -- Basis fns @ quad pts ):
>> -- [[ 0.78867513 0.21132487]
>> [ 0.21132487 0.78867513]]
>> -- Basis fn derivatives @ quad pts:
>> -- [[[-0.5]
>> [ 0.5]]
>>
>> [[-0.5]
>> [ 0.5]]]
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:399:_setupBC
>> -- explicit(info)
>> -- Added boundary condition 'face_ypos' as an integrator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [5] CPU time: 00:00:55, Memory usage: 353.70 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [2] CPU time: 00:00:55, Memory usage: 355.11 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 355.43 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages
>> /pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 352.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 354.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 354.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:45, Memory usage: 354.39 MB
>> >> /home/xia
>> oma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 352.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [1] CPU time: 00:00:55, Memory usage: 353.06 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [3] CPU time: 00:00:52, Memory usage: 354.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:49, Memory usage: 353.8 5 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 354.57 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 353.23 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [4] CPU time: 00:00:55, Memory usage: 351.50 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> &nbs p;-- [0] CPU time: 00:00:54, Memory usage: 370.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:425:_setupInterfaces
>> -- explicit(info)
>> -- Pre-initializing interior interfaces.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [5] CPU time: 00:00:55, Memory usage: 353.75 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [2] CPU time: 00:00:55, Memory usage: 355.17 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>>
>> -- explicit(debug)
>> -- [3] CPU time: 00:00:52, Memory usage: 354.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/FaultCohesiveDyn.py:115:preinitialize
>> -- faultcohesivedyn(info)
>> -- Pre-initializing fault 'fault'.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [2] CPU time: 00:00:55, Memory usage: 355.18 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [4] CPU time: 00:00:55, Memory usage: 351.54 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-package
>> s/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [5] CPU time: 00:00:55, Memory usage: 353.75 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/feassemble/FIATLagrange.py:407:initialize
>> -- fiatlagrange(info)
>> -- Cell geometry:
>> -- <pylith.feassemble.CellGeometry.GeometryLine2D; proxy of <Swig Object
>> of type 'pylith::feassemble::GeometryLine2D *' at 0x7f712ca3e930> >
>> -- Vertices:
>> -- [[-1.]
>> [ 1.]]
>> -- Quad pts:
>> -- [[-1.]
>> [ 1.]]
>> -- Quad wts:
>> -- [ 1. 1.]
>> -- Basis fns @ quad pts ):
>> -- [[ 1.00000000e+00 -3.4911 3100e-17]
>> [ -3.49113100e-17 1.00000000e+00]]
>> -- Basis fn derivatives @ quad pts:
>> -- [[[-0.5]
>> [ 0.5]]
>>
>> [[-0.5]
>> [ 0.5]]]
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:434:_setupInterfaces
>> -- explicit(info)
>> -- Added interface condition 'fault' as an integrator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 354.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInter
>> faces
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 352.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 354.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:49, Memory usage: 353.92 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 355.50 MB
>> >> /home/xiaoma5/project-cse/
>> pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 352.67 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 353.29 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:410:_setupBC
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 353.10 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [3] CPU time: 00:00:52, Memory usage: 354.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [1] CPU time: 00:00:55, Memory usage: 353.12 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:45, Memory usage: 354.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 354.63 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)< /div>
>> -- [0] CPU time: 00:00:54, Memory usage: 370.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:162:preinitialize
>> -- explicit(info)
>> -- Pre-initializing output.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [8] CPU time: 00:00:49, Memory usage: 352.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [14] CPU time: 00:00:49, Memory usage: 354.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug )
>> -- [12] CPU time: 00:00:49, Memory usage: 353.92 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [9] CPU time: 00:00:44, Memory usage: 355.50 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [13] CPU time: 00:00:49, Memory usage: 354.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [7] CPU time: 00:00:51, Memory usage: 353.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- py lithapp(debug)
>> -- [1] CPU time: 00:00:55, Memory usage: 353.12 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [11] CPU time: 00:00:45, Memory usage: 354.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [15] CPU time: 00:00:49, Memory usage: 352.67 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [10] CPU time: 00:00:49, Memory usage: 354.63 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [4] CPU time: 00:00:55, Memory usage: 351.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [0] CPU time: 00:00:54, Memory usage: 370.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Problem.py:150:verifyConfiguration
>> -- timedependent(info)
>> -- Verifying compatibility of problem configuration.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:445:_setupInterfaces
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 353.16 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/
>> pylith/apps/PyLithApp.py:121:main
>> -- pylithapp(debug)
>> -- [6] CPU time: 00:00:48, Memory usage: 353.16 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:117:initialize
>> -- timedependent(info)
>> -- Initializing problem.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:49, Memory usage: 353.23 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:00:55, Memory usage: 370.63 MB
>> >> /home/xiaoma5/project-cse/pylith/li
>> b/python2.7/site-packages/pylith/problems/Formulation.py:466:_initialize
>> -- explicit(info)
>> -- Initializing integrators.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:50, Memory usage: 354.71 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:50, Memory usage: 352.73 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:50, Memory usage: 354.55 MB
>> >& gt;
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:00:56, Memory usage: 353.19 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:00:55, Memory usage: 351.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:45, Memory usage: 354.52 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:0 0:50, Memory usage: 352.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:50, Memory usage: 354.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:00:56, Memory usage: 355.25 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:00:56, Memory usage: 353.83 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- ex plicit(debug)
>> -- [7] CPU time: 00:00:52, Memory usage: 353.37 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:45, Memory usage: 355.57 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:00:53, Memory usage: 354.68 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:463:_initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:50, Memory usage: 353.99 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/Fau
>> ltCohesiveDyn.py:164:initialize
>> -- faultcohesivedyn(info)
>> -- Initializing fault 'fault'.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:03, Memory usage: 766.14 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:00:59, Memory usage: 760.97 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:57, Memory usage: 760.02 MB
>> >> /home/xiaoma5/project-cse/pyl
>> ith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:58, Memory usage: 761.34 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:03, Memory usage: 767.47 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:56, Memory usage: 766.79 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:00, Memory usage: 769.09 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:58, Memory usage: 769.04 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:51, Memory usage: 762.76 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:03, Memory usage: 768.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:57, Memory usage: 769.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:03, Memory usage: 768.13 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:57, Memory usage: 760.38 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:56, Memory usage: 769.06 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:53, Memory usage: 768.88 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:02, Memory usage: 777.84 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:475:_initialize
>> -- explicit(info)
>> -- Initializing constraints.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:00:56, Memory usage: 766.79 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/probl
>> ems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:03, Memory usage: 766.14 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:00, Memory usage: 769.09 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:00:57, Memory usage: 760.02 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:00:58, Memory usage: 761.34 MB
>> >> /home/xiaoma
>> 5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:03, Memory usage: 768.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:00:58, Memory usage: 769.04 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:00:57, Memory usage: 769.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:03, Memory us age: 767.47 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:00:53, Memory usage: 768.88 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:02, Memory usage: 777.84 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:481:_initialize
>> -- explicit(info)
>> -- Setting up solution output.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> &nb sp;-- [7] CPU time: 00:00:59, Memory usage: 760.97 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:03, Memory usage: 768.13 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:00:57, Memory usage: 760.38 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:00:51, Memory usage: 762.76 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:00:56, Memory usage: 769.06 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:18, Memory usage: 766.72 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:12, Memory usage: 767.43 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:15, Memory usage: 769.67 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-pac
>> kages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:18, Memory usage: 768.71 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:07, Memory usage: 761.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:10, Memory usage: 778.49 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:490:_initialize
>> -- explicit(info)
>> -- Creating solution field.
>> >> /home/xiaoma5/projec
>> t-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:18, Memory usage: 769.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:13, Memory usage: 769.86 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:08, Memory usage: 769.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:13, Memory usage: 761 .04 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:06, Memory usage: 763.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:13, Memory usage: 762.00 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:12, Memory usage: 769.65 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:13, Memory usage: 769.63 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:18, Memory usage: 768.06 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:486:_initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:12, Memory usage: 766.79 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:19, Memory usage: 971.25 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_in
>> itialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:19, Memory usage: 970.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:08, Memory usage: 963.63 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:16, Memory usage: 971.48 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:12, Memory usage: 969.39 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/pyt
>> hon2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:19, Memory usage: 968.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:19, Memory usage: 969.87 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:10, Memory usage: 980.44 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:119:initialize
>> -- explicit(info)
>> -- Creating other fields.
>> >> /home/xiaom
>> a5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:14, Memory usage: 971.47 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:13, Memory usage: 971.68 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:14, Memory usage: 962.99 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:07, Memory u sage: 965.41 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:12, Memory usage: 971.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:13, Memory usage: 968.79 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:14, Memory usage: 963.97 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:540:_initialize
>> -- explicit(debug )
>> -- [11] CPU time: 00:01:09, Memory usage: 971.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:14, Memory usage: 1769.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:22, Memory usage: 1757.33 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:16, Memory usage: 1760.21 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initi
>> alize
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:16, Memory usage: 1758.09 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:11, Memory usage: 1752.93 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:16, Memory usage: 1758.56 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:19, Memory usage: 1760.36 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/sit
>> e-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:17, Memory usage: 1760.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:22, Memory usage: 1758.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:22, Memory usage: 1759.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:12, Memory usage: 1760.14 MB
>> >> /
>> home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:17, Memory usage: 1753.07 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:17, Memory usage: 1752.03 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:10, Memory usage: 1754.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:22, Memory usage : 1760.35 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:124:initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:17, Memory usage: 1760.25 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:14, Memory usage: 1769.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:151:initialize
>> -- explicit(info)
>> -- Creating lumped Jacobian matrix.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [4] C PU time: 00:01:22, Memory usage: 1757.33 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:16, Memory usage: 1758.09 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:16, Memory usage: 1760.21 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:11, Memory usage: 1752.93 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:16, Memory usage: 1758.56 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:22, Memory usage: 1760.35 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:22, Memory usage: 1759.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:10, Memory usage: 1754.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit
>> .py:147:initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:12, Memory usage: 1760.14 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:17, Memory usage: 1760.25 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:17, Memory usage: 1760.31 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:17, Memory usage: 1753.07 MB
>> >> /home/xiaoma5/project-cse/pylith/l
>> ib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:17, Memory usage: 1752.03 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:23, Memory usage: 1758.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:147:initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:20, Memory usage: 1760.36 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:16, Memory usage: 1923.75 MB
>> &n bsp;>>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:14, Memory usage: 1934.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:175:initialize
>> -- explicit(info)
>> -- Initializing solver.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:16, Memory usage: 1925.32 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:18, Memory usage: 1918.27 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:16, Memory usage: 1923.76 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:14, Memory usage: 1934.63 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:17, Memory usage: 1917.20 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [10 ] CPU time: 00:01:18, Memory usage: 1925.39 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:16, Memory usage: 1925.34 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:17, Memory usage: 1923.32 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:11, Memory usage: 1919.81 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:13, Memory usage: 1925.27 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [0] CPU time: 00:01:14, Memory usage: 1934.63 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:131:run
>> -- timedependent(info)
>> -- Solving problem.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:176:run
>> -- timedependent(info)
>> -- Main time loop, current time is t=0*s
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylit happ(debug)
>> -- [6] CPU time: 00:01:16, Memory usage: 1923.76 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:23, Memory usage: 1922.44 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:23, Memory usage: 1925.53 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:23, Memory usage: 1924.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:
>> 171:initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:18, Memory usage: 1925.37 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:18, Memory usage: 1918.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:20, Memory usage: 1925.45 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:13, Memory usage: 1925.28 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/py
>> thon2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:17, Memory usage: 1917.21 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:23, Memory usage: 1923.65 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [13] CPU time: 00:01:16, Memory usage: 1925.34 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:18, Memory usage: 1925.38 MB
>> >> ;
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:17, Memory usage: 1923.34 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:11, Memory usage: 1919.82 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:23, Memory usage: 1925.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:23, Memory us age: 1924.43 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:171:initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:12, Memory usage: 1918.14 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:20, Memory usage: 1925.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:18, Memory usage: 1925.41 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> &n bsp;-- [11] CPU time: 00:01:13, Memory usage: 1925.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [12] CPU time: 00:01:18, Memory usage: 1918.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [8] CPU time: 00:01:17, Memory usage: 1917.21 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [5] CPU time: 00:01:23, Memory usage: 1924.43 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [2] CPU time: 00:01:23, Memory usage: 1925.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:23, Memory usage: 1922.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:12, Memory usage: 1918.16 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [9] CPU time: 00:01:11, Memory usage: 1919.82 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:177:initialize
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:23, Memory usage: 1923.66 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [15] CPU time: 00:01:17, Memory usage: 1923.34 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [10] CPU time: 00:01:18, Memory usage: 1925.41 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [14] CPU time: 00:01:18, Memory usage: 1925.38 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:1
>> 26:main
>> -- pylithapp(debug)
>> -- [7] CPU time: 00:01:12, Memory usage: 1918.16 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [3] CPU time: 00:01:20, Memory usage: 1925.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [1] CPU time: 00:01:23, Memory usage: 1923.66 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py:126:main
>> -- pylithapp(debug)
>> -- [4] CPU time: 00:01:23, Memory usage: 1922.46 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/prob
>> lems/TimeDependent.py:187:run
>> -- timedependent(info)
>> -- Preparing to advance solution from time t=0*s to t=0.001*s.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:15, Memory usage: 1934.71 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:327:_reformJacobian
>> -- explicit(info)
>> -- Integrating Jacobian operator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:23, Memory usage: 1922.54 MB
>> >> /home/xiaoma5/pr
>> oject-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:17, Memory usage: 1923.84 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:12, Memory usage: 1918.24 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:23, Memory usage: 1924.52 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:21, Memory u sage: 1925.54 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:23, Memory usage: 1925.62 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:18, Memory usage: 1925.47 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:18, Memory usage: 1917.30 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit (debug)
>> -- [12] CPU time: 00:01:18, Memory usage: 1918.37 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:17, Memory usage: 1925.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:18, Memory usage: 1925.50 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:17, Memory usage: 1923.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/proble
>> ms/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:13, Memory usage: 1925.37 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:11, Memory usage: 1919.91 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:325:_reformJacobian
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:24, Memory usage: 1923.75 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:21, Memory usage: 2019.46 MB
>> >> /home
>> /xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:21, Memory usage: 2017.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [8] CPU time: 00:01:21, Memory usage: 2017.28 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:20, Memory usage: 2019.51 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [4] CPU time: 00:01 :27, Memory usage: 2016.60 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:20, Memory usage: 2017.88 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:22, Memory usage: 2018.44 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:21, Memory usage: 2019.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> &nb sp;-- explicit(debug)
>> -- [11] CPU time: 00:01:17, Memory usage: 2019.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:24, Memory usage: 2019.57 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:26, Memory usage: 2018.53 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:27, Memory usage: 2019.60 MB
>> >> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/py
>> lith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:18, Memory usage: 2026.55 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:193:run
>> -- timedependent(info)
>> -- Advancing solution from t=0*s to t=0.001*s.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:579:_reformResidual
>> -- explicit(info)
>> -- Integrating residual term in operator.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:15, Memory usage: 2019.98 MB
>> >> /home/xiaoma
>> 5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:16, Memory usage: 2018.44 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:338:_reformJacobian
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:27, Memory usage: 2017.73 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [4] CPU time: 00:01:43, Memory usage: 2677.08 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [6] CPU time: 00:01:37 , Memory usage: 2678.61 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [1] CPU time: 00:01:43, Memory usage: 2678.00 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [0] CPU time: 00:01:35, Memory usage: 2687.07 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:218:step
>> -- explicit(info)
>> -- Solving equations.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [5] CPU time: 00:01:43, Memory usage: 2678.91 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [2] CPU time: 00:01:43, Memory usage: 2680.24 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [10] CPU time: 00:01:38, Memory usage: 2679.65 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [11] CPU time: 00:01:33, Memory usage: 2680.03 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py
>> :586:_reformResidual
>> -- explicit(debug)
>> -- [3] CPU time: 00:01:40, Memory usage: 2679.88 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [12] CPU time: 00:01:38, Memory usage: 2679.21 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [9] CPU time: 00:01:31, Memory usage: 2680.93 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [13] CPU time: 00:01:37, Memory usage: 2680.00 MB
>> >> /home/xiao
>> ma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [14] CPU time: 00:01:38, Memory usage: 2680.06 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [7] CPU time: 00:01:32, Memory usage: 2679.39 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [15] CPU time: 00:01:37, Memory usage: 2678.42 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:586:_reformResidual
>> -- explicit(debug)
>> -- [8] CPU time : 00:01:38, Memory usage: 2677.84 MB
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:200:run
>> -- timedependent(info)
>> -- Finishing advancing solution from t=0*s to t=0.001*s.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Explicit.py:242:poststep
>> -- explicit(info)
>> -- Writing solution fields.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/faults/Fault.py:192:writeData
>> -- faultcohesivedyn(info)
>> -- Writing fault data.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:176:run
>> -- timedependent(info)
>> -- Main time l oop, current time is t=0.001*s
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:187:run
>> -- timedependent(info)
>> -- Preparing to advance solution from time t=0.001*s to t=0.002*s.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:193:run
>> -- timedependent(info)
>> -- Advancing solution from t=0.001*s to t=0.002*s.
>> >>
>> /home/xiaoma5/project-cse/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:579:_reformResidual
>> -- explicit(info)
>> -- Integrating residual term in operator.
>> **********************************
>> It seems that the program is stucked at the very first step
>> Can some one help me with this ?
>> Thanks,
>> Xiao
>> --
>>
>> -------------------------------------------------------------------------------------
>> *Xiao Ma*
>> Graduate Research Assistant
>> MS program in Structural Engineering
>> University of Illinois at Urbana-Champaign
>> E-mail: *xiaoma5 at illinois.edu <xiaoma5 at illinois.edu>*
>>
>> --------------------------------------------------------------------------------------
>>
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>
>
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> experiments lead.
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What most experimenters take for granted before they begin their
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