[CIG-SHORT] Pylith problem: PETSC ERROR

[Matthew Knepley]

On Thu, Feb 12, 2015 at 8:24 AM, Alessandro Di Cunzolo <
twinalexmax at hotmail.it> wrote:

> Good morning,
> i work with Pylith and i am getting this error:
>

I know this is never what you want to here, but we have recently fixed some
bugs in the fault
orientation code. We expect to make a release at the end of this week.
Would it be feasible
for you to test this upgrade when we release it?

  Thanks,

     Matt


> -------------------------
>
>  -- Initializing fault 'pPernicana'.
> [0]PETSC ERROR: --------------------- Error Message
> --------------------------------------------------------------
> [0]PETSC ERROR: Invalid argument
> [0]PETSC ERROR: Faces should separate only two cells, not 4
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html
> for trouble shooting.
> [0]PETSC ERROR: Petsc Development GIT revision: v3.4.4-4559-g852d360  GIT
> Date: 2014-05-19 15:04:32 -0500
> [0]PETSC ERROR: /opt/pylith-2.0.0/bin/mpinemesis on a arch-pylith-gcc-opt
> named yoda by adicunzolo Thu Feb 12 15:11:15 2015
> [0]PETSC ERROR: Configure options
> --prefix=/home/buildbot/install/pylith_centos_x86_64_binbot
> --download-fblaslapack=1 --with-c2html=0 --CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK
> --with-clanguage=C --with-mpicompilers=1 --with-debugging=0
> --download-chaco=1 --download-ml=1 --with-hdf5=1
> --with-hdf5-dir=/home/buildbot/install/pylith_centos_x86_64_binbot
> --with-x=0 --with-ssl=0 --with-shared-libraries=1
> [0]PETSC ERROR: #1 DMPlexOrient() line 2400 in
> /home/buildbot/slave/build/pylith_centos_x86_64_binbot/PETSc/petsc-pylith/binaries/src/dm/impls/plex/plex.c
> [0]PETSC ERROR: #2 static void
> pylith::faults::CohesiveTopology::createFaultParallel(pylith::topology::Mesh*,
> const pylith::topology::Mesh&, int, const char*, bool)() line 197 in
> faults/CohesiveTopology.cc
> Fatal error. Calling MPI_Abort() to abort PyLith application.
> Traceback (most recent call last):
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PetscApplication.py",
> line 64, in onComputeNodes
>     self.main(*args, **kwds)
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PyLithApp.py",
> line 125, in main
>     self.problem.initialize()
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/TimeDependent.py",
> line 119, in initialize
>     self.formulation.initialize(self.dimension, self.normalizer)
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Implicit.py",
> line 122, in initialize
>     self._initialize(dimension, normalizer)
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Formulation.py",
> line 470, in _initialize
>     integrator.initialize(totalTime, numTimeSteps, normalizer)
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveKin.py",
> line 166, in initialize
>     FaultCohesive.initialize(self, totalTime, numTimeSteps, normalizer)
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/Fault.py",
> line 170, in initialize
>     ModuleFault.initialize(self, self.mesh(), self.upDir)
>   File
> "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/faults.py",
> line 320, in initialize
>     def initialize(self, *args): return _faults.Fault_initialize(self,
> *args)
> RuntimeError: Error detected while in PETSc function.
> application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
> /opt/pylith-2.0.0/bin/nemesis: mpirun: exit 255
> /opt/pylith-2.0.0/bin/pylith: /opt/pylith-2.0.0/bin/nemesis: exit 1
>
> -----------------------------------------------
>
> Do you have any idea about the cause of this problem??
> Regards,
>
> Alessandro DC
>
>
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>



-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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