[CIG-SHORT] Pylith problem: PETSC ERROR

Thu Feb 12 07:51:38 PST 2015

Thanks for the quick reply, 
Ok, i will wait your upgrade .

Regards,

Alessandro DC

Date: Thu, 12 Feb 2015 09:38:45 -0600
From: knepley at mcs.anl.gov
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR

On Thu, Feb 12, 2015 at 8:24 AM, Alessandro Di Cunzolo <twinalexmax at hotmail.it> wrote:

Good morning,
i work with Pylith and i am getting this error:

I know this is never what you want to here, but we have recently fixed some bugs in the faultorientation code. We expect to make a release at the end of this week. Would it be feasiblefor you to test this upgrade when we release it?
  Thanks,
     Matt -------------------------

 -- Initializing fault 'pPernicana'.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: Faces should separate only two cells, not 4
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.4.4-4559-g852d360  GIT Date: 2014-05-19 15:04:32 -0500
[0]PETSC ERROR: /opt/pylith-2.0.0/bin/mpinemesis on a arch-pylith-gcc-opt named yoda by adicunzolo Thu Feb 12 15:11:15 2015
[0]PETSC ERROR: Configure options --prefix=/home/buildbot/install/pylith_centos_x86_64_binbot --download-fblaslapack=1 --with-c2html=0 --CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK --with-clanguage=C --with-mpicompilers=1 --with-debugging=0 --download-chaco=1 --download-ml=1 --with-hdf5=1 --with-hdf5-dir=/home/buildbot/install/pylith_centos_x86_64_binbot --with-x=0 --with-ssl=0 --with-shared-libraries=1
[0]PETSC ERROR: #1 DMPlexOrient() line 2400 in /home/buildbot/slave/build/pylith_centos_x86_64_binbot/PETSc/petsc-pylith/binaries/src/dm/impls/plex/plex.c
[0]PETSC ERROR: #2 static void pylith::faults::CohesiveTopology::createFaultParallel(pylith::topology::Mesh*, const pylith::topology::Mesh&, int, const char*, bool)() line 197 in faults/CohesiveTopology.cc
Fatal error. Calling MPI_Abort() to abort PyLith application.
Traceback (most recent call last):
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PetscApplication.py", line 64, in onComputeNodes
    self.main(*args, **kwds)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PyLithApp.py", line 125, in main
    self.problem.initialize()
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/TimeDependent.py", line 119, in initialize
    self.formulation.initialize(self.dimension, self.normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Implicit.py", line 122, in initialize
    self._initialize(dimension, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Formulation.py", line 470, in _initialize
    integrator.initialize(totalTime, numTimeSteps, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveKin.py", line 166, in initialize
    FaultCohesive.initialize(self, totalTime, numTimeSteps, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/Fault.py", line 170, in initialize
    ModuleFault.initialize(self, self.mesh(), self.upDir)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/faults.py", line 320, in initialize
    def initialize(self, *args): return _faults.Fault_initialize(self, *args)
RuntimeError: Error detected while in PETSc function.
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
/opt/pylith-2.0.0/bin/nemesis: mpirun: exit 255
/opt/pylith-2.0.0/bin/pylith: /opt/pylith-2.0.0/bin/nemesis: exit 1

-----------------------------------------------

Do you have any idea about the cause of this problem?? 
Regards,

Alessandro DC

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