[CIG-SHORT] PyLith configure script cannot find PETSc

[Brad Aagaard]

Romain,

Matt is correct.

The clean clone (before configure) contains $PETSC_DIR/lib/petsc-conf.

During configure, $PETSC_DIR/$PETSC_ARCH/lib/petsc-conf is created. 
PyLith needs this one, because it is specific to how PETSc was configured.

Brad




On 02/13/2015 07:43 AM, Matthew Knepley wrote:
> On Fri, Feb 13, 2015 at 9:34 AM, Romain Jolivet <jolivetinsar at gmail.com>
> wrote:
>
>> I don’t have  $PETSC_DIR/$PETSC_ARCH/lib/petsc-conf
>> It is the one being checked for in configure.
>> What I have is only $PETSC_DIR/lib/petsc-conf
>> That is both on our linux cluster and on my iMac.
>>
>
> The build process creates them. If they are not there, PETSc was not built.
> The
> configure log has a record of created files. Can you send it for the
> configuration
> that you cannot find this directory for?
>
>    Matt
>
>
>> R
>>
>>
>> Romain Jolivet
>> Cambridge, UK
>> jolivetinsar at gmail.com
>> UK: +44 7596 703 148
>> France: +33 6 52 91 76 39
>> USA: +1 (626) 560 6356
>>
>> On 13 Feb 2015, at 15:28, Matthew Knepley <knepley at mcs.anl.gov> wrote:
>>
>> On Fri, Feb 13, 2015 at 9:22 AM, Romain Jolivet <jolivetinsar at gmail.com>
>> wrote:
>>
>>> I got it to work, but not with the m4 file you provided.
>>> In your file, you test for $PETSC_DIR/$PETSC_ARCH/lib/petsc-conf
>>>
>> While the architecture I have is $PETSC_DIR/lib/petsc-conf
>>> The variable PETSC_ARCH is not used in the destination directory when I
>>> install petsc…
>>> Is that normal?
>>>
>>
>> Both of these directories exist. What is being checked for?
>>
>>    Thanks,
>>
>>       Matt
>>
>>
>>> R
>>>
>>> Romain Jolivet
>>> Cambridge, UK
>>> jolivetinsar at gmail.com
>>> UK: +44 7596 703 148
>>> France: +33 6 52 91 76 39
>>> USA: +1 (626) 560 6356
>>>
>>> On 13 Feb 2015, at 14:54, Brad Aagaard <baagaard at usgs.gov> wrote:
>>>
>>> Romain and Matt,
>>>
>>> This is already fixed. Romain needs to pull the m4 dir or reclone pylith.
>>>
>>> In the top level pylith dir,
>>>
>>> cd m4
>>> git pull origin master
>>>
>>> Brad
>>>
>>>
>>>
>>> On Feb 13, 2015, at 3:54 AM, Romain Jolivet <jolivetinsar at gmail.com>
>>> wrote:
>>>
>>> Oh, sorry, here it is.
>>> R
>>>
>>> <cit_petsc.m4>
>>>
>>>
>>> Romain Jolivet
>>> Cambridge, UK
>>> jolivetinsar at gmail.com
>>> UK: +44 7596 703 148
>>> France: +33 6 52 91 76 39
>>> USA: +1 (626) 560 6356
>>>
>>> On 13 Feb 2015, at 11:52, Matthew Knepley <knepley at mcs.anl.gov> wrote:
>>>
>>> On Fri, Feb 13, 2015 at 5:45 AM, Romain Jolivet <jolivetinsar at gmail.com>
>>> wrote:
>>>
>>>> Hello,
>>>>
>>>> After compiling manually petsc from the git repository, I noticed the
>>>> architecture of the file directories that are copied into the —prefix
>>>> argument are different from why I was used to.
>>>> As a consequence, the configure in pylith cannot find the petsc
>>>> libraries.
>>>> I looked into the m4/cit_petsc.m4 file used by autoreconf, and I do not
>>>> see the case for the architecture I have.
>>>>
>>>> I could modify it to adapt to my system, but, there should be a better
>>>> way.
>>>> Attached is the modified cit_petsc.m4 I modified to compile pylith.
>>>> Any suggestions?
>>>>
>>>
>>> There is nothing attached. The PyLith master branch tracks PETSc
>>> knepley/pylith, so all fixes
>>> should be there.
>>>
>>>    Thanks,
>>>
>>>      Matt
>>>
>>>
>>>>
>>>> R
>>>>
>>>>
>>>> —————————————————————————————————————
>>>> —————————————————————————————————————
>>>> Romain Jolivet
>>>> Postdoctoral Fellow
>>>>
>>>> University of Cambridge
>>>> Department of Earth Sciences
>>>> Bullard Labs
>>>> Madingley Rise
>>>> Madingley Road
>>>> Cambridge CB3 0EZ
>>>> United Kingdom
>>>>
>>>> email: rpj29 at cam.ac.uk
>>>> Phone: +44 1223 748 938
>>>> Mobile: +44 7596 703 148
>>>>
>>>> France: +33 6 52 91 76 39
>>>> US: +1 (626) 560 6356
>>>> —————————————————————————————————————
>>>> —————————————————————————————————————
>>>>
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>>>
>>>
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>>
>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>   _______________________________________________
>> CIG-SHORT mailing list
>> CIG-SHORT at geodynamics.org
>> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>
>>
>>
>> _______________________________________________
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