[CIG-SHORT] PyLith configure script cannot find PETSc

Fri Feb 13 07:47:45 PST 2015

The configure.log file is attached.

In the build directory of PETSc, I could find this arch-pylith directory, indeed, but not where PETSc has been installed (with all the other pylith stuffs like nemesis, spatialdata etc).
When I build pylith, I point to the directory where petsc has been installed, not built. Should I do that?

R

Romain Jolivet
Cambridge, UK
jolivetinsar at gmail.com
UK: +44 7596 703 148
France: +33 6 52 91 76 39
USA: +1 (626) 560 6356

On 13 Feb 2015, at 15:43, Matthew Knepley <knepley at mcs.anl.gov> wrote:

> On Fri, Feb 13, 2015 at 9:34 AM, Romain Jolivet <jolivetinsar at gmail.com> wrote:
> I don’t have  $PETSC_DIR/$PETSC_ARCH/lib/petsc-conf 
> It is the one being checked for in configure.
> What I have is only $PETSC_DIR/lib/petsc-conf
> That is both on our linux cluster and on my iMac.
> 
> The build process creates them. If they are not there, PETSc was not built. The
> configure log has a record of created files. Can you send it for the configuration
> that you cannot find this directory for?
> 
>   Matt
>  
> R
> 
> 
> Romain Jolivet
> Cambridge, UK
> jolivetinsar at gmail.com
> UK: +44 7596 703 148
> France: +33 6 52 91 76 39
> USA: +1 (626) 560 6356
> 
> On 13 Feb 2015, at 15:28, Matthew Knepley <knepley at mcs.anl.gov> wrote:
> 
>> On Fri, Feb 13, 2015 at 9:22 AM, Romain Jolivet <jolivetinsar at gmail.com> wrote:
>> I got it to work, but not with the m4 file you provided.
>> In your file, you test for $PETSC_DIR/$PETSC_ARCH/lib/petsc-conf
>> While the architecture I have is $PETSC_DIR/lib/petsc-conf
>> The variable PETSC_ARCH is not used in the destination directory when I install petsc…
>> Is that normal?
>> 
>> Both of these directories exist. What is being checked for?
>> 
>>   Thanks,
>> 
>>      Matt
>>  
>> R
>>  
>> Romain Jolivet
>> Cambridge, UK
>> jolivetinsar at gmail.com
>> UK: +44 7596 703 148
>> France: +33 6 52 91 76 39
>> USA: +1 (626) 560 6356
>> 
>> On 13 Feb 2015, at 14:54, Brad Aagaard <baagaard at usgs.gov> wrote:
>> 
>>> Romain and Matt,
>>> 
>>> This is already fixed. Romain needs to pull the m4 dir or reclone pylith.
>>> 
>>> In the top level pylith dir,
>>> 
>>> cd m4
>>> git pull origin master
>>> 
>>> Brad
>>> 
>>> 
>>> 
>>> On Feb 13, 2015, at 3:54 AM, Romain Jolivet <jolivetinsar at gmail.com> wrote:
>>> 
>>>> Oh, sorry, here it is.
>>>> R
>>>> 
>>>> <cit_petsc.m4>
>>>> 
>>>> Romain Jolivet
>>>> Cambridge, UK
>>>> jolivetinsar at gmail.com
>>>> UK: +44 7596 703 148
>>>> France: +33 6 52 91 76 39
>>>> USA: +1 (626) 560 6356
>>>> 
>>>> On 13 Feb 2015, at 11:52, Matthew Knepley <knepley at mcs.anl.gov> wrote:
>>>> 
>>>>> On Fri, Feb 13, 2015 at 5:45 AM, Romain Jolivet <jolivetinsar at gmail.com> wrote:
>>>>> Hello,
>>>>> 
>>>>> After compiling manually petsc from the git repository, I noticed the architecture of the file directories that are copied into the —prefix argument are different from why I was used to.
>>>>> As a consequence, the configure in pylith cannot find the petsc libraries.
>>>>> I looked into the m4/cit_petsc.m4 file used by autoreconf, and I do not see the case for the architecture I have.
>>>>> 
>>>>> I could modify it to adapt to my system, but, there should be a better way.
>>>>> Attached is the modified cit_petsc.m4 I modified to compile pylith.
>>>>> Any suggestions?
>>>>> 
>>>>> There is nothing attached. The PyLith master branch tracks PETSc knepley/pylith, so all fixes
>>>>> should be there.
>>>>> 
>>>>>   Thanks,
>>>>> 
>>>>>     Matt
>>>>>  
>>>>> 
>>>>> R
>>>>> 
>>>>> 
>>>>> —————————————————————————————————————
>>>>> —————————————————————————————————————
>>>>> Romain Jolivet
>>>>> Postdoctoral Fellow
>>>>> 
>>>>> University of Cambridge
>>>>> Department of Earth Sciences
>>>>> Bullard Labs
>>>>> Madingley Rise
>>>>> Madingley Road
>>>>> Cambridge CB3 0EZ
>>>>> United Kingdom
>>>>> 
>>>>> email: rpj29 at cam.ac.uk
>>>>> Phone: +44 1223 748 938
>>>>> Mobile: +44 7596 703 148
>>>>> 
>>>>> France: +33 6 52 91 76 39
>>>>> US: +1 (626) 560 6356
>>>>> —————————————————————————————————————
>>>>> —————————————————————————————————————
>>>>> 
>>>>> _______________________________________________
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>>>>> 
>>>>> 
>>>>> -- 
>>>>> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
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>> 
>> -- 
>> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
>> -- Norbert Wiener
>> _______________________________________________
>> CIG-SHORT mailing list
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> 
> 
> -- 
> What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
> -- Norbert Wiener
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