[CIG-SHORT] PETSC ERROR: Faces should separate only two cells, not 4

[Rosario Ruta]

Hi, i'm working with Alessandro Di Cunzolo, I've tested the v.2.1.0
version, but the problem is not resolved.
In attachment you'll find the files that I'm using.

The error found is:
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: Faces should separate only two cells, not 4

Can you tell me what the problem is?

​
 mesh.tar
<https://docs.google.com/file/d/0B_eGBsNTp8bcOE5GYk5fRVpQcjQ/edit?usp=drive_web>
​
Message: 1
Date: Wed, 18 Feb 2015 12:53:59 +0100
From: Alessandro Di Cunzolo <twinalexmax at hotmail.it>
To: "cig-short at geodynamics.org" <cig-short at geodynamics.org>
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR
Message-ID: <DUB127-W8448F23BE4F8A1615C5D51D32C0 at phx.gbl>
Content-Type: text/plain; charset="iso-8859-1"

Ok, thanks

Alessandro DC

Date: Wed, 18 Feb 2015 05:47:23 -0600
From: knepley at mcs.anl.gov
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR

On Wed, Feb 18, 2015 at 5:44 AM, Alessandro Di Cunzolo <
twinalexmax at hotmail.it> wrote:



Hi,
Have you released the new version with the  fault orientation code fixed?

We have approved the release candidate, so we hope the official release
will happen by Friday.
  Thanks,
     Matt Regards,

Alessandro DC

From: twinalexmax at hotmail.it
To: cig-short at geodynamics.org
Date: Thu, 12 Feb 2015 16:51:38 +0100
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR




Thanks for the quick reply,
Ok, i will wait your upgrade .

Regards,

Alessandro DC

Date: Thu, 12 Feb 2015 09:38:45 -0600
From: knepley at mcs.anl.gov
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR

On Thu, Feb 12, 2015 at 8:24 AM, Alessandro Di Cunzolo <
twinalexmax at hotmail.it> wrote:



Good morning,
i work with Pylith and i am getting this error:

I know this is never what you want to here, but we have recently fixed some
bugs in the faultorientation code. We expect to make a release at the end
of this week. Would it be feasiblefor you to test this upgrade when we
release it?
  Thanks,
     Matt -------------------------

 -- Initializing fault 'pPernicana'.
[0]PETSC ERROR: --------------------- Error Message
--------------------------------------------------------------
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: Faces should separate only two cells, not 4
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for
trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.4.4-4559-g852d360  GIT
Date: 2014-05-19 15:04:32 -0500
[0]PETSC ERROR: /opt/pylith-2.0.0/bin/mpinemesis on a arch-pylith-gcc-opt
named yoda by adicunzolo Thu Feb 12 15:11:15 2015
[0]PETSC ERROR: Configure options --prefix=/home/buildbot/
install/pylith_centos_x86_64_binbot --download-fblaslapack=1
--with-c2html=0 --CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK --with-clanguage=C
--with-mpicompilers=1 --with-debugging=0 --download-chaco=1 --download-ml=1
--with-hdf5=1 --with-hdf5-dir=/home/buildbot/install/pylith_centos_x86_64_binbot
--with-x=0 --with-ssl=0 --with-shared-libraries=1
[0]PETSC ERROR: #1 DMPlexOrient() line 2400 in /home/buildbot/slave/build/
pylith_centos_x86_64_binbot/PETSc/petsc-pylith/binaries/
src/dm/impls/plex/plex.c
[0]PETSC ERROR: #2 static void pylith::faults::CohesiveTopology::
createFaultParallel(pylith::topology::Mesh*, const pylith::topology::Mesh&,
int, const char*, bool)() line 197 in faults/CohesiveTopology.cc
Fatal error. Calling MPI_Abort() to abort PyLith application.
Traceback (most recent call last):
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/
pylith/apps/PetscApplication.py", line 64, in onComputeNodes
    self.main(*args, **kwds)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PyLithApp.py",
line 125, in main
    self.problem.initialize()
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/
pylith/problems/TimeDependent.py", line 119, in initialize
    self.formulation.initialize(self.dimension, self.normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Implicit.py",
line 122, in initialize
    self._initialize(dimension, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/
pylith/problems/Formulation.py", line 470, in _initialize
    integrator.initialize(totalTime, numTimeSteps, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveKin.py",
line 166, in initialize
    FaultCohesive.initialize(self, totalTime, numTimeSteps, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/Fault.py",
line 170, in initialize
    ModuleFault.initialize(self, self.mesh(), self.upDir)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/faults.py",
line 320, in initialize
    def initialize(self, *args): return _faults.Fault_initialize(self,
*args)
RuntimeError: Error detected while in PETSc function.
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
/opt/pylith-2.0.0/bin/nemesis: mpirun: exit 255
/opt/pylith-2.0.0/bin/pylith: /opt/pylith-2.0.0/bin/nemesis: exit 1

-----------------------------------------------

Do you have any idea about the cause of this problem??
Regards,

Alessandro DC

-- 
-------------------
Rosario Ruta
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