[CIG-SHORT] Dynamic Analysis, OutputSolnPoints

Tue May 31 08:25:40 PDT 2016

Farrokh,

We allow the coordinates of the output points to be in a different 
coordinate system than the mesh. The default is a 3-D Cartesian 
coordinate system, so in 2-D you need to change the space dimension of 
the coordinate system. See examples/2d/greensfns/reverse/pylithapp.cfg:

[pylithapp.problem.formulation]
output = [domain,groundsurf,points]
output.points = pylith.meshio.OutputSolnPoints
output.groundsurf = pylith.meshio.OutputSolnSubset

...

[pylithapp.problem.formulation.output.points]
coordsys.space_dim = 2
coordsys.units = km

writer = pylith.meshio.DataWriterHDF5
reader.filename = output_points.txt

Regards,
Brad

On 05/28/2016 04:09 PM, Farrokh Sheibani wrote:
> Dear Brad,
>
> I hope you are doing great. I had a question regarding the ERROR that I
> got for the dynamic analysis of a rupture propagation in a predefined
> natural fracture for a lab scale triaxial sample numerical modeling
> using Pylith. I defined some points to capture displacements and
> velocities on the surface of the model using OutputSolnPoints but I got
> this error. I was wondering if you may give me some inputs about it.
>
>
> Thank you so much in advance.
>
> Best regards,
>
> Farrokh
>
>
>>> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [1] CPU time: 00:04:51, Memory usage: 509.39 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [2] CPU time: 00:04:51, Memory usage: 519.34 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [4] CPU time: 00:04:51, Memory usage: 579.74 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [6] CPU time: 00:04:51, Memory usage: 586.10 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [3] CPU time: 00:04:51, Memory usage: 533.55 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [5] CPU time: 00:04:51, Memory usage: 580.76 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [7] CPU time: 00:04:51, Memory usage: 586.54 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [8] CPU time: 00:04:51, Memory usage: 519.45 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [9] CPU time: 00:04:51, Memory usage: 515.51 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:472:_initialize
>   -- explicit(debug)
>   -- [0] CPU time: 00:04:50, Memory usage: 1261.45 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:475:_initialize
>   -- explicit(info)
>   -- Initializing constraints.
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [2] CPU time: 00:04:52, Memory usage: 544.14 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [8] CPU time: 00:04:52, Memory usage: 547.42 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [1] CPU time: 00:04:51, Memory usage: 540.67 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [4] CPU time: 00:04:52, Memory usage: 579.82 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [5] CPU time: 00:04:52, Memory usage: 580.81 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [6] CPU time: 00:04:52, Memory usage: 586.10 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [9] CPU time: 00:04:52, Memory usage: 540.54 MB
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [7] CPU time: 00:04:52, Memory usage: 586.57 MB
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [0] CPU time: 00:04:50, Memory usage: 1261.45 MB
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:481:_initialize
>   -- explicit(info)
>   -- Setting up solution output.
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
>   >>
> /data1/farrokh/Pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:478:_initialize
>   -- explicit(debug)
>   -- [3] CPU time: 00:04:51, Memory usage: 550.46 MB
> mpinemesis: meshio/OutputSolnPoints.cc <http://OutputSolnPoints.cc>:118:
> void
> pylith::meshio::OutputSolnPoints::setupInterpolator(pylith::topology::Mesh*,
> const PylithScalar*, int, int, const
> spatialdata::units::Nondimensional&): Assertion `csMesh->spaceDim() ==
> spaceDim' failed.
> [0]0:Return code = 0, signaled with Aborted
> [0]1:Return code = 0, signaled with Aborted
> [0]2:Return code = 0, signaled with Aborted
> [0]3:Return code = 0, signaled with Aborted
> [0]4:Return code = 0, signaled with Aborted
> [0]5:Return code = 0, signaled with Aborted
> [0]6:Return code = 0, signaled with Aborted
> [0]7:Return code = 0, signaled with Aborted
> [0]8:Return code = 0, signaled with Aborted
> [0]9:Return code = 0, signaled with Aborted
>
> Farrokh Sheibani, PhD
> Postdoctoral Research Associate
> Department of Earth Atmospheric and Planetary Sciences; Earth Resources
> Laboratory
> Massachusetts Institute of Technology
>
>
>
>
>
>