[CIG-SHORT] PyLith version 2.2.0 installation from source
Josimar Alves da Silva
jsilva.mit at gmail.com
Thu Jun 8 05:58:47 PDT 2017
Brad,
Thank you so much for the help. The MPI version seems compatible with what
is asked on the installation file:
"mpicc -show" results in:
gcc -I/cm/shared/engaging/openmpi/1.8.8/include -pthread -Wl,-rpath
-Wl,/cm/shared/engaging/openmpi/1.8.8/lib -Wl,--enable-new-dtags
-L/cm/shared/engaging/openmpi/1.8.8/lib -lmpi
However, the gcc version is older than what is asked on the installation
file:
cm/shared/apps/gcc/4.8.4/bin/gcc
In order to update the gcc version, I attempted to build PyLith again
using the following configuration:
./configure --with-make-threads=2 --prefix=$HOME/pylith --enable-python
--enable-force-install --enable-gcc
However I still got the error message that I sent on the previous e-mail.
Note that I did load the "setup.sh" file before "make".
You can find all the log files that you asked on the previous e-mail, along
with a shell script that I am using to build pylith, on the dropbox link
below:
https://www.dropbox.com/sh/xjr5dn23ptxivv3/AACLybuo8ckIvk9tZwOl6IrVa?dl=0
Let me know if you have any further suggestions.
thank you in advance for the help,
Josimar
On Wed, Jun 7, 2017 at 6:10 PM, Brad Aagaard <baagaard at usgs.gov> wrote:
> Josimar,
>
> The error you are getting seems to suggest that the compiler does not
> recognize the -fp-model strict command line argument. This could be the
> case if a different compiler is being used than the one it thinks it should
> be using.
>
> Check to make sure the gcc and MPI in your path are consistent. Usually
> "mpicc -show" will show you which compiler is being used. Also make sure
> the shell environment when you build matches the one used during the
> configure (and loads the setup.sh generated in the configure process).
>
> If you still get stuck, send the config.log for the top-level installer
> configure, and the config.log and make.log (capture all of the make output)
> for the package that fails to build.
>
> Regards,
> Brad
>
>
>
>
>
>
> On 06/07/2017 01:39 PM, Josimar Alves da Silva wrote:
>
>> Dear Brad,
>>
>> I am building PyLith version 2.2.0 from source on a linux machine. I am
>> getting the error below.
>>
>> See computer information below along with the error message at the end of
>> the e-mail. The config.log file is also attached.
>>
>> Please let me know if you have seen this error before and how to correct
>> it.
>>
>> thank you in advance,
>> Josimar
>>
>>
>>
>> ############# BASIC COMPUTER INFORMATION HERE
>>
>> Linux eofe4 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC
>> 2015 x86_64 x86_64 x86_64 GNU/Linux
>>
>>
>> ########################
>>
>> Architecture: x86_64
>>
>> CPU op-mode(s): 32-bit, 64-bit
>>
>> Byte Order: Little Endian
>>
>> CPU(s): 16
>>
>> On-line CPU(s) list: 0-15
>>
>> Thread(s) per core: 1
>>
>> Core(s) per socket: 8
>>
>> Socket(s): 2
>>
>> NUMA node(s): 2
>>
>> Vendor ID: GenuineIntel
>>
>> CPU family: 6
>>
>> Model: 45
>>
>> Model name: Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz
>>
>> Stepping: 7
>>
>> CPU MHz: 1999.998
>>
>> BogoMIPS: 3999.47
>>
>> Virtualization: VT-x
>>
>> L1d cache: 32K
>>
>> L1i cache: 32K
>>
>> L2 cache: 256K
>>
>> L3 cache: 20480K
>>
>> NUMA node0 CPU(s): 0,2,4,6,8,10,12,14
>>
>> NUMA node1 CPU(s): 1,3,5,7,9,11,13,15
>>
>>
>>
>>
>>
>> ############# ERRO MESSAGE FROM PYLITH INSTALLATION HERE #############
>>
>> make[4]: Entering directory `/home/josimar/build/pylith/python-build'
>>
>> mpicc -c -fno-strict-aliasing -fp-model strict -g -O2 -DNDEBUG -g -fwrapv
>> -O3 -Wall -Wstrict-prototypes -I. -IInclude -I../Python-2.7.13/Include
>> -I/home/josimar/pylith/include -fPIC -DPy_BUILD_CORE -o
>> Modules/python.o ../Python-2.7.13/Modules/python.c
>>
>> mpicc -c -fno-strict-aliasing -fp-model strict -g -O2 -DNDEBUG -g -fwrapv
>> -O3 -Wall -Wstrict-prototypes -I. -IInclude -I../Python-2.7.13/Include
>> -I/home/josimar/pylith/include -fPIC -DPy_BUILD_CORE -o
>> Parser/acceler.o ../Python-2.7.13/Parser/acceler.c
>>
>> gcc: error: strict: No such file or directory
>>
>> gcc: error: unrecognized command line option ‘-fp-model’
>>
>> make[4]: *** [Modules/python.o] Error 1
>>
>> make[4]: *** Waiting for unfinished jobs....
>>
>> gcc: error: strict: No such file or directory
>>
>> gcc: error: unrecognized command line option ‘-fp-model’
>>
>> make[4]: *** [Parser/acceler.o] Error 1
>>
>> make[4]: Leaving directory `/home/josimar/build/pylith/python-build'
>>
>> make[3]: *** [python] Error 2
>>
>> make[3]: Leaving directory `/home/josimar/build/pylith'
>>
>> make[2]: *** [installed_python] Error 2
>>
>> make[2]: Leaving directory `/home/josimar/build/pylith'
>>
>> make[1]: *** [installed_swig] Error 2
>>
>> make[1]: Leaving directory `/home/josimar/build/pylith'
>>
>> make: *** [installed_pylith] Error 2
>>
>>
>>
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